Wall clock time and date at job start Mon Mar 30 2020 20:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99630 * 2 1 4 4 C 1.38805 * 119.94750 * 0.23397 * 3 2 1 5 5 C 1.38132 * 119.77761 * 180.30278 * 4 3 2 6 6 C 1.38223 * 120.22287 * 359.46260 * 5 4 3 7 7 C 1.38652 * 120.56101 * 0.28304 * 6 5 4 8 8 C 1.38320 * 119.93875 * 179.97438 * 3 2 1 9 9 N 1.39583 * 111.64705 * 179.97438 * 7 6 5 10 10 C 1.46531 * 110.08988 * 359.97438 * 9 7 6 11 11 H 1.09007 * 110.29637 * 241.07245 * 10 9 7 12 12 C 1.50700 * 110.29954 * 118.93243 * 10 9 7 13 13 H 1.07996 * 119.99998 * 244.22598 * 12 10 9 14 14 C 1.37877 * 120.00058 * 64.22916 * 12 10 9 15 15 N 1.31519 * 119.99971 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00156 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47140 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47141 * 119.99675 * 16 14 12 19 19 H 1.48496 * 109.47022 * 239.99459 * 16 14 12 20 20 C 1.51244 * 130.91661 * 180.25613 * 6 5 4 21 21 H 1.08997 * 109.46900 * 60.00199 * 1 2 3 22 22 H 1.09003 * 109.47045 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47030 * 300.00303 * 1 2 3 24 24 H 1.08004 * 120.11325 * 0.06148 * 4 3 2 25 25 H 1.08002 * 119.89211 * 179.74787 * 5 4 3 26 26 H 1.07995 * 119.88362 * 359.97438 * 8 3 2 27 27 H 0.96996 * 124.95729 * 180.02562 * 9 7 6 28 28 H 0.96991 * 120.00294 * 179.97438 * 15 14 12 29 29 H 1.09001 * 110.41656 * 298.78602 * 20 6 5 30 30 H 1.08995 * 110.41894 * 61.25720 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2888 2.3743 0.0049 5 6 1.9194 3.6032 -0.0014 6 6 3.2997 3.6770 -0.0015 7 6 4.0674 2.5224 -0.0010 8 6 3.4273 1.2819 0.0005 9 7 5.4328 2.8119 -0.0017 10 6 5.6397 4.2625 -0.0033 11 1 6.1825 4.5661 -0.8986 12 6 6.3908 4.6849 1.2331 13 1 5.9166 5.3278 1.9597 14 6 7.6835 4.2505 1.4365 15 7 8.2608 3.4672 0.5518 16 14 8.6142 4.7734 2.9693 17 1 7.7482 5.6481 3.8000 18 1 8.9974 3.5700 3.7504 19 1 9.8371 5.5183 2.5759 20 6 4.2279 4.8711 -0.0024 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.2102 2.3188 0.0097 25 1 1.3321 4.5096 -0.0018 26 1 4.0127 0.3744 0.0014 27 1 6.1414 2.1495 -0.0019 28 1 9.1703 3.1619 0.6947 29 1 4.0729 5.4724 -0.8982 30 1 4.0734 5.4735 0.8927 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992457.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:28 Heat of formation + Delta-G solvation = -12.226158 kcal Electronic energy + Delta-G solvation = -14316.107206 eV Core-core repulsion = 11883.253747 eV Total energy + Delta-G solvation = -2432.853459 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.74845 -38.18901 -34.79855 -32.35938 -31.06845 -28.44656 -28.15516 -26.48576 -24.77165 -21.73234 -20.51083 -20.21496 -17.42926 -16.87740 -15.88846 -15.36352 -14.91076 -14.87463 -14.46845 -13.70627 -13.04493 -12.83812 -12.35854 -12.07122 -11.85738 -11.80914 -11.15581 -10.99209 -10.91517 -10.81302 -10.61386 -10.08314 -9.98890 -9.60646 -8.87764 -8.69220 -7.59026 -6.40612 -6.06733 -4.32839 2.17784 2.39395 3.19424 3.28705 3.33048 3.62406 4.28154 4.56761 4.72303 5.22775 5.30941 5.33372 5.46903 5.55451 5.72626 5.86460 6.02747 6.17227 6.40635 6.44608 6.58022 6.73966 6.97301 7.09295 7.30323 7.37226 7.47862 7.71915 7.96390 8.08879 8.33544 8.78987 9.17127 9.38055 10.83213 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.049402 B = 0.007026 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.646772 B = 3984.216524 C = 4195.059087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.325 6.325 3 C 0.165 3.835 4 C -0.291 4.291 5 C -0.028 4.028 6 C -0.212 4.212 7 C 0.253 3.747 8 C -0.246 4.246 9 N -0.695 5.695 10 C 0.260 3.740 11 H 0.042 0.958 12 C -0.526 4.526 13 H 0.065 0.935 14 C 0.070 3.930 15 N -0.892 5.892 16 Si 0.899 3.101 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.071 4.071 21 H 0.051 0.949 22 H 0.090 0.910 23 H 0.051 0.949 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.410 0.590 28 H 0.265 0.735 29 H 0.058 0.942 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.998 -2.660 -1.378 11.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.239 6.239 3 C 0.120 3.880 4 C -0.313 4.313 5 C -0.047 4.047 6 C -0.217 4.217 7 C 0.139 3.861 8 C -0.271 4.271 9 N -0.318 5.318 10 C 0.158 3.842 11 H 0.060 0.940 12 C -0.565 4.565 13 H 0.083 0.917 14 C -0.134 4.134 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.109 4.109 21 H 0.069 0.931 22 H 0.109 0.891 23 H 0.070 0.930 24 H 0.132 0.868 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.249 0.751 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.523 -2.778 -1.426 10.977 hybrid contribution 0.654 -0.037 0.879 1.096 sum -9.869 -2.815 -0.547 10.277 Atomic orbital electron populations 1.22904 0.79364 1.02811 1.01129 1.85990 1.20604 1.28067 1.89242 1.18359 0.91361 0.83289 0.95030 1.20536 0.98484 0.92099 1.20143 1.19936 0.92502 0.96297 0.96003 1.20012 0.93088 0.95376 1.13270 1.18332 0.86657 0.92390 0.88736 1.19226 0.91186 0.96208 1.20438 1.46111 1.01272 1.09861 1.74522 1.19150 0.90874 0.76846 0.97326 0.94031 1.21609 0.97936 1.30398 1.06542 0.91662 1.25097 0.97344 0.94310 0.96614 1.69869 1.14292 1.34026 1.34782 0.86428 0.79634 0.78530 0.82797 1.19531 1.20880 1.20785 1.21112 0.93976 0.95098 1.00706 0.93053 0.89139 0.93021 0.86823 0.87146 0.86758 0.75126 0.92512 0.92395 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.33 -5.41 10.49 -19.42 -0.20 -5.62 16 3 C 0.16 3.08 6.67 -39.34 -0.26 2.81 16 4 C -0.29 -5.01 9.04 -39.41 -0.36 -5.37 16 5 C -0.03 -0.51 10.03 -39.63 -0.40 -0.91 16 6 C -0.21 -4.44 6.23 -104.21 -0.65 -5.09 16 7 C 0.25 5.62 7.03 -83.67 -0.59 5.03 16 8 C -0.25 -5.05 10.01 -39.05 -0.39 -5.44 16 9 N -0.70 -16.65 5.95 -52.80 -0.31 -16.97 16 10 C 0.26 6.39 3.49 -68.68 -0.24 6.15 16 11 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 12 C -0.53 -13.97 8.76 -34.44 -0.30 -14.27 16 13 H 0.07 1.72 7.35 -52.49 -0.39 1.34 16 14 C 0.07 1.86 5.42 -17.82 -0.10 1.76 16 15 N -0.89 -24.32 12.47 55.43 0.69 -23.62 16 16 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.07 -1.52 6.57 -27.23 -0.18 -1.70 16 21 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 24 H 0.11 1.61 6.30 -52.48 -0.33 1.28 16 25 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 26 H 0.11 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.41 10.04 8.27 -40.82 -0.34 9.70 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.51 7.41 -51.93 -0.39 1.12 16 LS Contribution 256.31 15.07 3.86 3.86 Total: -1.00 -28.21 256.31 -6.94 -35.15 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -3.48 Total: 7.19 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -2.47 Total: -15.64 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.38 Total: -40.59 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.20 Total: -5.62 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.21 -6.94 -35.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992457.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.926 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds