Wall clock time and date at job start Mon Mar 30 2020 20:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99630 * 2 1 4 4 C 1.38805 * 119.94750 * 0.23397 * 3 2 1 5 5 C 1.38132 * 119.77761 * 180.30278 * 4 3 2 6 6 C 1.38223 * 120.22287 * 359.46260 * 5 4 3 7 7 C 1.38652 * 120.56101 * 0.28304 * 6 5 4 8 8 C 1.38320 * 119.93875 * 179.97438 * 3 2 1 9 9 N 1.39583 * 111.64705 * 179.97438 * 7 6 5 10 10 C 1.46531 * 110.08988 * 359.97438 * 9 7 6 11 11 H 1.09007 * 110.29637 * 241.07245 * 10 9 7 12 12 C 1.50700 * 110.29954 * 118.93243 * 10 9 7 13 13 H 1.07996 * 119.99998 * 244.22598 * 12 10 9 14 14 C 1.37877 * 120.00058 * 64.22916 * 12 10 9 15 15 N 1.31519 * 119.99971 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00156 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47140 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47141 * 119.99675 * 16 14 12 19 19 H 1.48496 * 109.47022 * 239.99459 * 16 14 12 20 20 C 1.51244 * 130.91661 * 180.25613 * 6 5 4 21 21 H 1.08997 * 109.46900 * 60.00199 * 1 2 3 22 22 H 1.09003 * 109.47045 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47030 * 300.00303 * 1 2 3 24 24 H 1.08004 * 120.11325 * 0.06148 * 4 3 2 25 25 H 1.08002 * 119.89211 * 179.74787 * 5 4 3 26 26 H 1.07995 * 119.88362 * 359.97438 * 8 3 2 27 27 H 0.96996 * 124.95729 * 180.02562 * 9 7 6 28 28 H 0.96991 * 120.00294 * 179.97438 * 15 14 12 29 29 H 1.09001 * 110.41656 * 298.78602 * 20 6 5 30 30 H 1.08995 * 110.41894 * 61.25720 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2888 2.3743 0.0049 5 6 1.9194 3.6032 -0.0014 6 6 3.2997 3.6770 -0.0015 7 6 4.0674 2.5224 -0.0010 8 6 3.4273 1.2819 0.0005 9 7 5.4328 2.8119 -0.0017 10 6 5.6397 4.2625 -0.0033 11 1 6.1825 4.5661 -0.8986 12 6 6.3908 4.6849 1.2331 13 1 5.9166 5.3278 1.9597 14 6 7.6835 4.2505 1.4365 15 7 8.2608 3.4672 0.5518 16 14 8.6142 4.7734 2.9693 17 1 7.7482 5.6481 3.8000 18 1 8.9974 3.5700 3.7504 19 1 9.8371 5.5183 2.5759 20 6 4.2279 4.8711 -0.0024 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.2102 2.3188 0.0097 25 1 1.3321 4.5096 -0.0018 26 1 4.0127 0.3744 0.0014 27 1 6.1414 2.1495 -0.0019 28 1 9.1703 3.1619 0.6947 29 1 4.0729 5.4724 -0.8982 30 1 4.0734 5.4735 0.8927 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992457.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:28 Heat of formation + Delta-G solvation = -29.858635 kcal Electronic energy + Delta-G solvation = -14316.871807 eV Core-core repulsion = 11883.253747 eV Total energy + Delta-G solvation = -2433.618060 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.23515 -39.62824 -36.40419 -34.27681 -32.64531 -29.94123 -29.79559 -27.72837 -26.55273 -23.32075 -22.19646 -21.76058 -18.86251 -18.78919 -17.46728 -16.60049 -16.48483 -16.33497 -16.13833 -15.46994 -14.55006 -14.27133 -14.00078 -13.75136 -13.40989 -13.03568 -12.89826 -12.66120 -12.55213 -12.42584 -12.20150 -11.66068 -11.51728 -11.43695 -10.75623 -10.47930 -9.07393 -8.33759 -7.83991 -6.40485 0.67139 0.88175 1.37325 1.40515 1.51821 2.36021 2.37048 2.91364 3.05710 3.42153 3.96486 4.23505 4.31436 4.39388 4.50962 4.56449 4.67289 4.73739 4.78276 4.85537 5.00501 5.19606 5.36064 5.52134 5.62324 5.67001 5.82652 5.93982 6.12520 6.48887 6.67883 6.83850 7.29112 7.39254 8.82110 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.049402 B = 0.007026 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.646772 B = 3984.216524 C = 4195.059087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.341 6.341 3 C 0.165 3.835 4 C -0.275 4.275 5 C -0.022 4.022 6 C -0.232 4.232 7 C 0.225 3.775 8 C -0.263 4.263 9 N -0.713 5.713 10 C 0.256 3.744 11 H 0.012 0.988 12 C -0.544 4.544 13 H 0.062 0.938 14 C 0.024 3.976 15 N -0.918 5.918 16 Si 0.962 3.038 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.276 1.276 20 C -0.063 4.063 21 H 0.066 0.934 22 H 0.118 0.882 23 H 0.064 0.936 24 H 0.154 0.846 25 H 0.146 0.854 26 H 0.109 0.891 27 H 0.401 0.599 28 H 0.266 0.734 29 H 0.075 0.925 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 -2.557 -0.803 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.120 3.880 4 C -0.296 4.296 5 C -0.040 4.040 6 C -0.237 4.237 7 C 0.114 3.886 8 C -0.288 4.288 9 N -0.337 5.337 10 C 0.153 3.847 11 H 0.030 0.970 12 C -0.583 4.583 13 H 0.080 0.920 14 C -0.177 4.177 15 N -0.557 5.557 16 Si 0.787 3.213 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.201 1.201 20 C -0.100 4.100 21 H 0.084 0.916 22 H 0.136 0.864 23 H 0.083 0.917 24 H 0.171 0.829 25 H 0.164 0.836 26 H 0.127 0.873 27 H 0.237 0.763 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.145 -2.681 -0.856 13.443 hybrid contribution 1.256 -0.183 0.656 1.428 sum -11.889 -2.864 -0.200 12.231 Atomic orbital electron populations 1.23324 0.76355 1.05281 1.02393 1.85986 1.23642 1.27081 1.88768 1.18455 0.90829 0.84784 0.93978 1.20991 1.00397 0.90955 1.17265 1.20346 0.91389 0.98213 0.94096 1.20188 0.94377 0.94332 1.14817 1.18574 0.85961 0.93729 0.90353 1.19364 0.92624 0.95531 1.21293 1.45863 1.02036 1.09081 1.76710 1.19023 0.92558 0.77781 0.95320 0.97014 1.21894 0.98644 1.30561 1.07165 0.92003 1.25842 0.98207 0.94376 0.99306 1.69977 1.14510 1.34871 1.36295 0.85452 0.78425 0.78042 0.79380 1.19030 1.20928 1.20148 1.20972 0.92135 0.95395 1.01536 0.91580 0.86388 0.91741 0.82859 0.83612 0.87321 0.76307 0.92474 0.90615 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.34 -10.43 10.49 -92.42 -0.97 -11.40 16 3 C 0.17 5.81 6.67 22.43 0.15 5.96 16 4 C -0.28 -8.38 9.04 22.38 0.20 -8.17 16 5 C -0.02 -0.71 10.03 22.24 0.22 -0.49 16 6 C -0.23 -9.50 6.23 -19.60 -0.12 -9.62 16 7 C 0.22 10.14 7.03 38.33 0.27 10.40 16 8 C -0.26 -10.86 10.01 22.61 0.23 -10.64 16 9 N -0.71 -35.68 5.95 -320.97 -1.91 -37.59 16 10 C 0.26 13.05 3.49 44.49 0.16 13.21 16 11 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 12 C -0.54 -29.62 8.76 25.60 0.22 -29.40 16 13 H 0.06 3.31 7.35 -2.91 -0.02 3.29 16 14 C 0.02 1.28 5.42 84.65 0.46 1.73 16 15 N -0.92 -51.63 12.47 21.45 0.27 -51.36 16 16 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 20 C -0.06 -2.68 6.57 30.27 0.20 -2.48 16 21 H 0.07 1.06 7.67 -2.39 -0.02 1.05 16 22 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 1.06 7.65 -2.39 -0.02 1.05 16 24 H 0.15 3.44 6.30 -2.91 -0.02 3.42 16 25 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 26 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 27 H 0.40 20.82 8.27 -92.71 -0.77 20.05 16 28 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.07 3.01 7.41 -2.39 -0.02 2.99 16 Total: -1.00 -61.79 256.31 2.90 -58.90 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.38 Total: 24.45 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 3.10 Total: -27.99 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -1.64 Total: -88.95 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.97 Total: -11.40 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -61.79 2.90 -58.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992457.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.038 kcal (2) G-P(sol) polarization free energy of solvation -61.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds