Wall clock time and date at job start Mon Mar 30 2020 20:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35892 * 117.00259 * 2 1 4 4 C 1.38810 * 119.94715 * 359.97438 * 3 2 1 5 5 C 1.38131 * 119.77855 * 179.97438 * 4 3 2 6 6 C 1.38218 * 120.22517 * 359.97438 * 5 4 3 7 7 C 1.38649 * 120.55918 * 0.31237 * 6 5 4 8 8 C 1.38315 * 119.94679 * 179.97438 * 3 2 1 9 9 N 1.39587 * 111.64347 * 180.22179 * 7 6 5 10 10 C 1.46530 * 110.08912 * 359.53488 * 9 7 6 11 11 H 1.09007 * 110.29468 * 119.30013 * 10 9 7 12 12 C 1.50708 * 110.29874 * 241.33499 * 10 9 7 13 13 H 1.07998 * 119.99603 * 118.54578 * 12 10 9 14 14 C 1.37874 * 120.00034 * 298.55123 * 12 10 9 15 15 N 1.31514 * 120.00196 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99627 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47215 * 90.00337 * 16 14 12 18 18 H 1.48500 * 109.46866 * 209.99886 * 16 14 12 19 19 H 1.48503 * 109.47346 * 329.99797 * 16 14 12 20 20 C 1.51244 * 130.91436 * 180.02562 * 6 5 4 21 21 H 1.08992 * 109.47683 * 180.02562 * 1 2 3 22 22 H 1.09011 * 109.46729 * 300.00363 * 1 2 3 23 23 H 1.09002 * 109.46936 * 59.99407 * 1 2 3 24 24 H 1.08000 * 120.10753 * 0.02711 * 4 3 2 25 25 H 1.08006 * 119.88713 * 180.02562 * 5 4 3 26 26 H 1.08007 * 119.87764 * 0.02562 * 8 3 2 27 27 H 0.97001 * 124.95698 * 179.80944 * 9 7 6 28 28 H 0.97003 * 119.99645 * 179.97438 * 15 14 12 29 29 H 1.08994 * 110.41964 * 61.23876 * 20 6 5 30 30 H 1.09000 * 110.41786 * 298.76415 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2890 2.3743 -0.0005 5 6 1.9197 3.6031 0.0000 6 6 3.2999 3.6768 0.0016 7 6 4.0675 2.5221 -0.0038 8 6 3.4273 1.2818 0.0005 9 7 5.4330 2.8116 0.0039 10 6 5.6400 4.2622 0.0044 11 1 6.1836 4.5663 0.8990 12 6 6.3922 4.6834 -1.2317 13 1 5.9351 5.3615 -1.9372 14 6 7.6639 4.2029 -1.4621 15 7 8.2206 3.3775 -0.6028 16 14 8.5959 4.7245 -2.9946 17 1 9.3805 5.9511 -2.7034 18 1 9.5161 3.6351 -3.4090 19 1 7.6321 5.0017 -4.0899 20 6 4.2282 4.8709 0.0030 21 1 -0.3634 -1.0275 0.0005 22 1 -0.3633 0.5140 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 0.2104 2.3188 -0.0005 25 1 1.3324 4.5096 0.0000 26 1 4.0128 0.3742 0.0005 27 1 6.1416 2.1491 0.0046 28 1 9.1152 3.0392 -0.7652 29 1 4.0725 5.4725 0.8984 30 1 4.0745 5.4730 -0.8925 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992459.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:29 Heat of formation + Delta-G solvation = -11.938343 kcal Electronic energy + Delta-G solvation = -14326.182678 eV Core-core repulsion = 11893.341700 eV Total energy + Delta-G solvation = -2432.840978 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.74423 -38.18607 -34.79927 -32.34556 -31.06567 -28.44530 -28.14501 -26.48308 -24.76927 -21.72935 -20.50334 -20.21068 -17.42155 -16.87856 -15.87484 -15.35902 -14.90939 -14.87171 -14.46347 -13.70414 -13.03759 -12.83399 -12.34909 -12.06568 -11.85111 -11.81128 -11.15434 -10.99204 -10.88407 -10.80626 -10.63214 -10.08498 -10.00047 -9.62226 -8.87813 -8.67954 -7.58485 -6.40197 -6.06232 -4.32431 2.18360 2.40094 3.20492 3.28324 3.32291 3.62864 4.28251 4.57587 4.73370 5.22999 5.30873 5.33665 5.47333 5.55796 5.73147 5.86848 6.03155 6.17694 6.41142 6.44635 6.58539 6.74254 6.97740 7.09696 7.30652 7.37025 7.48316 7.72067 7.96874 8.08658 8.33134 8.79195 9.19354 9.38427 10.83483 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.048847 B = 0.007080 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.076068 B = 3953.831371 C = 4172.405985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.325 6.325 3 C 0.165 3.835 4 C -0.292 4.292 5 C -0.028 4.028 6 C -0.213 4.213 7 C 0.253 3.747 8 C -0.246 4.246 9 N -0.694 5.694 10 C 0.260 3.740 11 H 0.040 0.960 12 C -0.528 4.528 13 H 0.065 0.935 14 C 0.070 3.930 15 N -0.893 5.893 16 Si 0.899 3.101 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.071 4.071 21 H 0.090 0.910 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.412 0.588 28 H 0.266 0.734 29 H 0.058 0.942 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.926 -2.551 1.447 11.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.239 6.239 3 C 0.120 3.880 4 C -0.313 4.313 5 C -0.047 4.047 6 C -0.218 4.218 7 C 0.139 3.861 8 C -0.271 4.271 9 N -0.316 5.316 10 C 0.158 3.842 11 H 0.058 0.942 12 C -0.566 4.566 13 H 0.083 0.917 14 C -0.133 4.133 15 N -0.531 5.531 16 Si 0.727 3.273 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.109 4.109 21 H 0.109 0.891 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.132 0.868 25 H 0.128 0.872 26 H 0.132 0.868 27 H 0.251 0.749 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.450 -2.683 1.494 10.891 hybrid contribution 0.647 -0.023 -0.898 1.107 sum -9.803 -2.706 0.596 10.187 Atomic orbital electron populations 1.22904 0.79366 1.02806 1.01127 1.85987 1.20599 1.28075 1.89240 1.18356 0.91358 0.83287 0.95019 1.20534 0.98476 0.92100 1.20193 1.19932 0.92498 0.96294 0.96000 1.20005 0.93090 0.95365 1.13321 1.18329 0.86661 0.92388 0.88704 1.19222 0.91182 0.96212 1.20458 1.46069 1.01298 1.09859 1.74410 1.19137 0.90869 0.76921 0.97237 0.94182 1.21581 0.99568 1.28149 1.07348 0.91691 1.25083 0.97211 0.94357 0.96662 1.69834 1.15801 1.31888 1.35580 0.86476 0.79598 0.78291 0.82977 1.20381 1.21109 1.19706 1.21109 0.93980 0.95110 1.00687 0.89141 0.93054 0.93024 0.86830 0.87157 0.86758 0.74922 0.92447 0.92398 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.38 16 2 O -0.33 -5.43 10.49 -19.40 -0.20 -5.63 16 3 C 0.16 3.09 6.67 -39.34 -0.26 2.83 16 4 C -0.29 -5.03 9.04 -39.41 -0.36 -5.39 16 5 C -0.03 -0.51 10.03 -39.63 -0.40 -0.91 16 6 C -0.21 -4.46 6.23 -104.21 -0.65 -5.11 16 7 C 0.25 5.65 7.03 -83.68 -0.59 5.06 16 8 C -0.25 -5.08 10.01 -39.05 -0.39 -5.47 16 9 N -0.69 -16.69 5.91 -52.80 -0.31 -17.00 16 10 C 0.26 6.41 3.54 -68.68 -0.24 6.17 16 11 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 12 C -0.53 -14.02 8.77 -34.44 -0.30 -14.33 16 13 H 0.06 1.71 7.36 -52.49 -0.39 1.32 16 14 C 0.07 1.87 5.40 -17.82 -0.10 1.78 16 15 N -0.89 -24.33 12.24 55.43 0.68 -23.65 16 16 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 C -0.07 -1.52 6.58 -27.23 -0.18 -1.70 16 21 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.54 7.66 -51.92 -0.40 0.14 16 23 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 24 H 0.11 1.62 6.30 -52.49 -0.33 1.29 16 25 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 26 H 0.11 2.27 8.06 -52.48 -0.42 1.85 16 27 H 0.41 10.15 8.05 -40.82 -0.33 9.82 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.50 7.42 -51.93 -0.39 1.12 16 LS Contribution 255.89 15.07 3.86 3.86 Total: -1.00 -28.20 255.89 -6.95 -35.15 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -3.47 Total: 7.30 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -2.47 Total: -15.68 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.37 Total: -40.66 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.20 Total: -5.63 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.20 -6.95 -35.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992459.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.208 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds