Wall clock time and date at job start Mon Mar 30 2020 20:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32309 * 120.42893 * 2 1 4 4 C 1.32478 * 120.69603 * 180.02562 * 3 2 1 5 5 N 1.38412 * 119.19069 * 179.97438 * 4 3 2 6 6 N 1.32480 * 121.61577 * 0.02562 * 4 3 2 7 7 C 1.32381 * 120.73769 * 359.95330 * 6 4 3 8 8 C 1.38478 * 119.09247 * 0.05209 * 7 6 4 9 9 C 1.51078 * 109.85357 * 179.97438 * 8 7 6 10 10 H 1.09005 * 110.30288 * 101.97109 * 9 8 7 11 11 C 1.50697 * 110.30680 * 224.02858 * 9 8 7 12 12 H 1.07998 * 119.99961 * 5.72049 * 11 9 8 13 13 C 1.37885 * 120.00328 * 185.44300 * 11 9 8 14 14 N 1.31515 * 119.99648 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00138 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47348 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46893 * 120.00384 * 15 13 11 18 18 H 1.48494 * 109.47079 * 240.00165 * 15 13 11 19 19 C 1.54410 * 105.15841 * 342.95120 * 9 8 7 20 20 C 1.51194 * 131.20736 * 180.02562 * 7 6 4 21 21 H 1.09010 * 109.46862 * 275.36217 * 1 2 3 22 22 H 1.08995 * 109.47174 * 35.35635 * 1 2 3 23 23 H 1.09000 * 109.47335 * 155.36937 * 1 2 3 24 24 H 0.96996 * 119.99825 * 0.02562 * 5 4 3 25 25 H 0.97002 * 119.99139 * 180.02562 * 5 4 3 26 26 H 0.96999 * 120.00146 * 179.97438 * 14 13 11 27 27 H 1.08997 * 110.81233 * 144.39619 * 19 9 8 28 28 H 1.09001 * 110.80910 * 267.91705 * 19 9 8 29 29 H 1.09001 * 110.30228 * 316.00967 * 20 7 6 30 30 H 1.08994 * 110.29716 * 78.05166 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1771 1.1408 0.0000 4 6 3.5018 1.1470 -0.0005 5 7 4.1712 2.3585 -0.0010 6 7 4.2016 0.0221 -0.0015 7 6 3.5928 -1.1534 -0.0012 8 6 2.2086 -1.1948 -0.0008 9 6 1.7382 -2.6305 -0.0010 10 1 1.4193 -2.9242 0.9991 11 6 0.6095 -2.8109 -0.9830 12 1 0.3176 -1.9939 -1.6262 13 6 -0.0469 -4.0207 -1.0645 14 7 0.3118 -5.0172 -0.2847 15 14 -1.4465 -4.2440 -2.2812 16 1 -1.6532 -2.9815 -3.0352 17 1 -1.1090 -5.3364 -3.2289 18 1 -2.6897 -4.5919 -1.5473 19 6 2.9665 -3.4577 -0.4386 20 6 4.1448 -2.5610 -0.0016 21 1 -0.3633 0.0960 1.0233 22 1 -0.3633 0.8381 -0.5946 23 1 -0.3634 -0.9341 -0.4283 24 1 3.6705 3.1892 -0.0006 25 1 5.1411 2.3766 -0.0018 26 1 -0.1501 -5.8682 -0.3416 27 1 2.9942 -4.4148 0.0822 28 1 2.9706 -3.6030 -1.5188 29 1 4.9671 -2.6445 -0.7122 30 1 4.4805 -2.8358 0.9983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036399.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:40 Heat of formation + Delta-G solvation = 41.031670 kcal Electronic energy + Delta-G solvation = -14700.382671 eV Core-core repulsion = 12302.131397 eV Total energy + Delta-G solvation = -2398.251275 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.53577 -36.57379 -34.18450 -33.30341 -31.80340 -29.47756 -27.63588 -26.78074 -23.94955 -22.02094 -21.05054 -19.48146 -17.60713 -16.48776 -16.34451 -15.17769 -14.80315 -14.63880 -13.81329 -13.20199 -12.94970 -12.52257 -12.06552 -12.00637 -11.68834 -11.28083 -11.12745 -10.95665 -10.55484 -10.45204 -10.34582 -9.73347 -9.46625 -9.32246 -8.94577 -8.50578 -8.32962 -7.31616 -6.09751 -4.12676 1.85568 2.05443 3.25734 3.35022 3.38464 3.60548 4.37278 4.59130 4.64972 5.20688 5.33762 5.55336 5.74903 5.95908 6.02611 6.25077 6.29531 6.37153 6.55571 6.66728 6.91125 6.98933 7.12794 7.21859 7.42332 7.56777 7.67253 7.74147 7.87389 8.03570 8.31128 8.87629 9.03779 9.50486 10.98991 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.038137 B = 0.009667 C = 0.008158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.020175 B = 2895.851955 C = 3431.218047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.217 3.783 3 N -0.578 5.578 4 C 0.542 3.458 5 N -0.836 5.836 6 N -0.576 5.576 7 C 0.183 3.817 8 C -0.204 4.204 9 C 0.094 3.906 10 H 0.052 0.948 11 C -0.512 4.512 12 H 0.064 0.936 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.888 3.112 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.095 4.095 20 C -0.073 4.073 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.120 0.880 24 H 0.407 0.593 25 H 0.406 0.594 26 H 0.261 0.739 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.142 7.188 0.836 8.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.072 3.928 3 N -0.302 5.302 4 C 0.183 3.817 5 N -0.387 5.387 6 N -0.300 5.300 7 C 0.037 3.963 8 C -0.211 4.211 9 C 0.074 3.926 10 H 0.070 0.930 11 C -0.549 4.549 12 H 0.082 0.918 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.715 3.285 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.133 4.133 20 C -0.111 4.111 21 H 0.088 0.912 22 H 0.080 0.920 23 H 0.138 0.862 24 H 0.237 0.763 25 H 0.236 0.764 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.539 7.823 0.878 9.087 hybrid contribution -0.834 -0.451 -0.638 1.143 sum 3.705 7.372 0.240 8.254 Atomic orbital electron populations 1.21126 0.88270 1.05640 1.02525 1.20897 0.96901 0.86176 0.88822 1.67690 1.07332 1.31232 1.23950 1.19035 0.85334 0.86307 0.91034 1.41440 1.08923 1.03425 1.84887 1.66935 1.41835 0.97454 1.23745 1.22047 0.92178 0.92706 0.89325 1.22378 0.95332 0.99428 1.03926 1.18102 0.93425 0.82965 0.98080 0.93015 1.21073 1.16027 0.97707 1.20125 0.91842 1.24965 0.97039 0.95985 0.95653 1.69946 1.41229 1.02987 1.38238 0.86596 0.82246 0.78329 0.81288 1.19622 1.21011 1.20921 1.22373 0.92313 0.97719 1.00937 1.21203 0.99990 0.88135 1.01811 0.91164 0.91964 0.86238 0.76282 0.76380 0.92874 0.90745 0.91904 0.91104 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 10.02 36.00 0.36 -1.89 16 2 C 0.22 4.64 6.77 -82.27 -0.56 4.09 16 3 N -0.58 -11.84 10.40 -10.16 -0.11 -11.94 16 4 C 0.54 10.50 8.67 -322.84 -2.80 7.70 16 5 N -0.84 -11.76 9.07 29.76 0.27 -11.49 16 6 N -0.58 -11.85 10.46 -10.01 -0.10 -11.95 16 7 C 0.18 3.91 7.37 -82.03 -0.60 3.31 16 8 C -0.20 -4.58 5.52 -104.23 -0.58 -5.16 16 9 C 0.09 2.23 2.57 -92.00 -0.24 1.99 16 10 H 0.05 1.34 8.14 -51.93 -0.42 0.91 16 11 C -0.51 -12.99 6.53 -34.44 -0.22 -13.22 16 12 H 0.06 1.62 6.32 -52.49 -0.33 1.29 16 13 C 0.07 1.71 5.38 -17.82 -0.10 1.61 16 14 N -0.89 -23.83 12.91 55.43 0.72 -23.12 16 15 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.09 -2.06 6.08 -25.27 -0.15 -2.22 16 20 C -0.07 -1.39 6.76 -26.92 -0.18 -1.57 16 21 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 22 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.12 2.47 4.53 -51.93 -0.24 2.24 16 24 H 0.41 4.80 8.94 -40.82 -0.37 4.43 16 25 H 0.41 4.80 8.94 -40.82 -0.37 4.43 16 26 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 28 H 0.06 1.42 7.91 -51.93 -0.41 1.01 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 253.16 15.07 3.82 3.82 Total: -1.00 -28.70 253.16 -8.88 -37.58 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.38 Total: 7.33 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -5.07 Total: -5.35 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.78 Total: -58.50 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.70 -8.88 -37.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036399.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.612 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds