Wall clock time and date at job start Mon Mar 30 2020 20:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32309 * 120.42893 * 2 1 4 4 C 1.32478 * 120.69603 * 180.02562 * 3 2 1 5 5 N 1.38412 * 119.19069 * 179.97438 * 4 3 2 6 6 N 1.32480 * 121.61577 * 0.02562 * 4 3 2 7 7 C 1.32381 * 120.73769 * 359.95330 * 6 4 3 8 8 C 1.38478 * 119.09247 * 0.05209 * 7 6 4 9 9 C 1.51078 * 109.85357 * 179.97438 * 8 7 6 10 10 H 1.09005 * 110.30288 * 101.97109 * 9 8 7 11 11 C 1.50697 * 110.30680 * 224.02858 * 9 8 7 12 12 H 1.07998 * 119.99961 * 5.72049 * 11 9 8 13 13 C 1.37885 * 120.00328 * 185.44300 * 11 9 8 14 14 N 1.31515 * 119.99648 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00138 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47348 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46893 * 120.00384 * 15 13 11 18 18 H 1.48494 * 109.47079 * 240.00165 * 15 13 11 19 19 C 1.54410 * 105.15841 * 342.95120 * 9 8 7 20 20 C 1.51194 * 131.20736 * 180.02562 * 7 6 4 21 21 H 1.09010 * 109.46862 * 275.36217 * 1 2 3 22 22 H 1.08995 * 109.47174 * 35.35635 * 1 2 3 23 23 H 1.09000 * 109.47335 * 155.36937 * 1 2 3 24 24 H 0.96996 * 119.99825 * 0.02562 * 5 4 3 25 25 H 0.97002 * 119.99139 * 180.02562 * 5 4 3 26 26 H 0.96999 * 120.00146 * 179.97438 * 14 13 11 27 27 H 1.08997 * 110.81233 * 144.39619 * 19 9 8 28 28 H 1.09001 * 110.80910 * 267.91705 * 19 9 8 29 29 H 1.09001 * 110.30228 * 316.00967 * 20 7 6 30 30 H 1.08994 * 110.29716 * 78.05166 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1771 1.1408 0.0000 4 6 3.5018 1.1470 -0.0005 5 7 4.1712 2.3585 -0.0010 6 7 4.2016 0.0221 -0.0015 7 6 3.5928 -1.1534 -0.0012 8 6 2.2086 -1.1948 -0.0008 9 6 1.7382 -2.6305 -0.0010 10 1 1.4193 -2.9242 0.9991 11 6 0.6095 -2.8109 -0.9830 12 1 0.3176 -1.9939 -1.6262 13 6 -0.0469 -4.0207 -1.0645 14 7 0.3118 -5.0172 -0.2847 15 14 -1.4465 -4.2440 -2.2812 16 1 -1.6532 -2.9815 -3.0352 17 1 -1.1090 -5.3364 -3.2289 18 1 -2.6897 -4.5919 -1.5473 19 6 2.9665 -3.4577 -0.4386 20 6 4.1448 -2.5610 -0.0016 21 1 -0.3633 0.0960 1.0233 22 1 -0.3633 0.8381 -0.5946 23 1 -0.3634 -0.9341 -0.4283 24 1 3.6705 3.1892 -0.0006 25 1 5.1411 2.3766 -0.0018 26 1 -0.1501 -5.8682 -0.3416 27 1 2.9942 -4.4148 0.0822 28 1 2.9706 -3.6030 -1.5188 29 1 4.9671 -2.6445 -0.7122 30 1 4.4805 -2.8358 0.9983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036399.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:40 Heat of formation + Delta-G solvation = 24.267713 kcal Electronic energy + Delta-G solvation = -14701.109611 eV Core-core repulsion = 12302.131397 eV Total energy + Delta-G solvation = -2398.978214 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.11598 -38.19742 -35.70277 -34.99472 -33.52538 -31.03936 -29.37047 -28.40910 -25.78902 -23.59114 -22.65995 -21.19888 -19.20415 -18.21741 -17.86077 -16.70044 -16.41381 -16.35643 -15.44407 -14.89415 -14.52841 -14.17447 -13.67068 -13.63959 -13.41200 -12.98860 -12.81745 -12.74283 -12.29193 -12.16319 -12.06256 -11.35225 -11.11567 -11.01299 -10.72059 -10.45787 -9.93556 -8.87259 -8.06352 -6.14365 0.24353 0.44776 1.45049 1.49446 1.58569 2.24942 2.48405 2.99880 3.09435 3.24559 3.80352 4.01218 4.13731 4.36059 4.46447 4.70527 4.82549 4.85818 4.95357 5.11626 5.17336 5.32687 5.44231 5.62226 5.64436 5.79074 5.91317 6.12383 6.35982 6.52433 6.54568 6.90019 7.50742 7.56877 9.01618 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.038137 B = 0.009667 C = 0.008158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.020175 B = 2895.851955 C = 3431.218047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.210 3.790 3 N -0.585 5.585 4 C 0.536 3.464 5 N -0.809 5.809 6 N -0.583 5.583 7 C 0.181 3.819 8 C -0.238 4.238 9 C 0.094 3.906 10 H 0.021 0.979 11 C -0.514 4.514 12 H 0.059 0.941 13 C 0.022 3.978 14 N -0.915 5.915 15 Si 0.945 3.055 16 H -0.267 1.267 17 H -0.285 1.285 18 H -0.281 1.281 19 C -0.088 4.088 20 C -0.062 4.062 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.099 0.901 24 H 0.421 0.579 25 H 0.420 0.580 26 H 0.262 0.738 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.713 8.564 0.466 9.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.065 3.935 3 N -0.310 5.310 4 C 0.177 3.823 5 N -0.362 5.362 6 N -0.308 5.308 7 C 0.035 3.965 8 C -0.245 4.245 9 C 0.075 3.925 10 H 0.039 0.961 11 C -0.552 4.552 12 H 0.077 0.923 13 C -0.177 4.177 14 N -0.554 5.554 15 Si 0.771 3.229 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.207 1.207 19 C -0.126 4.126 20 C -0.100 4.100 21 H 0.103 0.897 22 H 0.098 0.902 23 H 0.118 0.882 24 H 0.253 0.747 25 H 0.252 0.748 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.137 9.258 0.505 10.600 hybrid contribution -0.965 -0.757 -0.497 1.323 sum 4.172 8.501 0.008 9.470 Atomic orbital electron populations 1.21059 0.87135 1.05210 1.03594 1.21227 0.97955 0.86265 0.88043 1.67784 1.07826 1.30499 1.24870 1.19544 0.85443 0.87498 0.89860 1.41428 1.09730 1.02280 1.82760 1.67046 1.41594 0.97452 1.24672 1.22333 0.91948 0.93786 0.88462 1.22301 0.96246 0.98927 1.07023 1.17947 0.93846 0.84629 0.96087 0.96078 1.21286 1.16434 0.97485 1.20021 0.92289 1.25600 0.99137 0.95838 0.97157 1.70044 1.42403 1.03327 1.39663 0.85702 0.79721 0.78138 0.79339 1.19147 1.21076 1.20665 1.22155 0.93058 0.97612 0.99805 1.21131 0.99142 0.86286 1.03450 0.89695 0.90158 0.88242 0.74680 0.74762 0.92925 0.91680 0.93273 0.88860 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.20 10.02 71.23 0.71 -3.49 16 2 C 0.21 8.84 6.77 42.56 0.29 9.13 16 3 N -0.58 -22.92 10.40 -186.07 -1.94 -24.85 16 4 C 0.54 19.56 8.67 261.50 2.27 21.83 16 5 N -0.81 -20.26 9.07 -59.76 -0.54 -20.80 16 6 N -0.58 -22.81 10.46 -185.59 -1.94 -24.75 16 7 C 0.18 7.51 7.37 42.69 0.31 7.82 16 8 C -0.24 -10.65 5.52 -19.61 -0.11 -10.76 16 9 C 0.09 4.58 2.57 -11.69 -0.03 4.55 16 10 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 11 C -0.51 -26.52 6.53 25.60 0.17 -26.35 16 12 H 0.06 3.04 6.32 -2.91 -0.02 3.02 16 13 C 0.02 1.16 5.38 84.66 0.46 1.61 16 14 N -0.92 -50.08 12.91 21.45 0.28 -49.80 16 15 Si 0.94 41.57 29.54 68.60 2.03 43.60 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 C -0.09 -3.85 6.08 31.54 0.19 -3.65 16 20 C -0.06 -2.28 6.76 30.47 0.21 -2.08 16 21 H 0.08 2.86 8.14 -2.38 -0.02 2.84 16 22 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 23 H 0.10 4.13 4.53 -2.39 -0.01 4.12 16 24 H 0.42 8.52 8.94 -92.71 -0.83 7.69 16 25 H 0.42 8.50 8.94 -92.71 -0.83 7.67 16 26 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 27 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.05 2.25 7.91 -2.39 -0.02 2.23 16 29 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -60.49 253.16 1.88 -58.61 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -0.47 Total: 19.39 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 4.47 Total: -1.39 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -4.14 Total: -120.21 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -60.49 1.88 -58.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036399.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.881 kcal (2) G-P(sol) polarization free energy of solvation -60.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds