Wall clock time and date at job start Mon Mar 30 2020 20:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32302 * 120.42842 * 2 1 4 4 C 1.32481 * 120.69708 * 180.02562 * 3 2 1 5 5 N 1.38400 * 119.19622 * 180.02562 * 4 3 2 6 6 N 1.32486 * 121.60970 * 0.04626 * 4 3 2 7 7 C 1.32376 * 120.74511 * 359.90662 * 6 4 3 8 8 C 1.38482 * 119.08422 * 0.08861 * 7 6 4 9 9 C 1.51080 * 109.85115 * 179.97438 * 8 7 6 10 10 H 1.08995 * 110.39142 * 258.09991 * 9 8 7 11 11 C 1.50706 * 110.30623 * 135.98451 * 9 8 7 12 12 H 1.08005 * 119.99758 * 2.81628 * 11 9 8 13 13 C 1.37871 * 120.00102 * 182.81512 * 11 9 8 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 C 1.54406 * 105.15651 * 17.06708 * 9 8 7 20 20 C 1.51194 * 131.21632 * 180.02562 * 7 6 4 21 21 H 1.08994 * 109.47523 * 269.97918 * 1 2 3 22 22 H 1.09004 * 109.46918 * 29.98234 * 1 2 3 23 23 H 1.09005 * 109.47092 * 149.97456 * 1 2 3 24 24 H 0.97002 * 119.99952 * 359.97438 * 5 4 3 25 25 H 0.96998 * 120.00202 * 180.02562 * 5 4 3 26 26 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 27 27 H 1.08999 * 110.81577 * 92.07623 * 19 9 8 28 28 H 1.09004 * 110.81312 * 215.40010 * 19 9 8 29 29 H 1.08998 * 110.29716 * 44.00843 * 20 7 6 30 30 H 1.09004 * 110.37693 * 281.91524 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1771 1.1408 0.0000 4 6 3.5019 1.1470 -0.0005 5 7 4.1713 2.3583 0.0000 6 7 4.2015 0.0220 -0.0019 7 6 3.5928 -1.1535 -0.0011 8 6 2.2086 -1.1948 -0.0005 9 6 1.7382 -2.6305 -0.0002 10 1 1.4193 -2.9259 -0.9997 11 6 0.6098 -2.8109 0.9824 12 1 0.2265 -1.9603 1.5266 13 6 0.0668 -4.0616 1.1866 14 7 0.5339 -5.0974 0.5243 15 14 -1.3313 -4.2852 2.4051 16 1 -0.7739 -4.5806 3.7494 17 1 -2.1383 -3.0402 2.4664 18 1 -2.1932 -5.4128 1.9679 19 6 2.9665 -3.4577 0.4368 20 6 4.1447 -2.5612 -0.0018 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5136 23 1 -0.3633 -0.8898 -0.5143 24 1 3.6706 3.1892 0.0004 25 1 5.1411 2.3765 -0.0007 26 1 1.2601 -4.9813 -0.1081 27 1 2.9712 -3.6031 1.5170 28 1 2.9921 -4.4164 -0.0814 29 1 4.9682 -2.6448 0.7073 30 1 4.4782 -2.8376 -1.0020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036400.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:41 Heat of formation + Delta-G solvation = 37.338630 kcal Electronic energy + Delta-G solvation = -14749.791573 eV Core-core repulsion = 12351.380156 eV Total energy + Delta-G solvation = -2398.411417 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.65330 -36.80657 -34.30015 -33.53083 -31.73879 -29.59880 -27.52128 -26.65289 -23.89512 -22.10646 -21.24225 -19.61879 -17.80576 -16.66048 -16.53230 -15.27399 -15.16374 -14.09262 -13.86631 -13.28002 -13.15901 -12.69668 -12.17981 -12.10162 -11.73653 -11.40178 -11.12830 -10.89398 -10.67355 -10.53971 -10.12666 -9.83045 -9.59605 -9.51300 -8.70852 -8.46055 -8.34602 -7.39174 -6.35163 -4.09641 1.75438 1.94975 3.42703 3.44473 3.51836 3.60308 4.45925 4.51640 4.54417 5.19058 5.33503 5.43599 5.62194 5.80100 5.87833 6.10089 6.19870 6.28965 6.38317 6.52758 6.69563 6.76043 6.90364 7.06988 7.09343 7.44587 7.48374 7.65313 7.92002 8.14625 8.41494 8.84342 8.94262 9.60692 11.00889 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.037965 B = 0.009751 C = 0.008209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.345702 B = 2870.910271 C = 3409.895992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.218 3.782 3 N -0.576 5.576 4 C 0.544 3.456 5 N -0.834 5.834 6 N -0.575 5.575 7 C 0.184 3.816 8 C -0.199 4.199 9 C 0.080 3.920 10 H 0.035 0.965 11 C -0.589 4.589 12 H 0.055 0.945 13 C 0.022 3.978 14 N -0.912 5.912 15 Si 1.066 2.934 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.285 1.285 19 C -0.109 4.109 20 C -0.070 4.070 21 H 0.080 0.920 22 H 0.060 0.940 23 H 0.092 0.908 24 H 0.408 0.592 25 H 0.407 0.593 26 H 0.272 0.728 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 8.317 -1.181 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 N -0.300 5.300 4 C 0.185 3.815 5 N -0.385 5.385 6 N -0.298 5.298 7 C 0.038 3.962 8 C -0.205 4.205 9 C 0.061 3.939 10 H 0.053 0.947 11 C -0.627 4.627 12 H 0.074 0.926 13 C -0.182 4.182 14 N -0.549 5.549 15 Si 0.895 3.105 16 H -0.216 1.216 17 H -0.214 1.214 18 H -0.210 1.210 19 C -0.148 4.148 20 C -0.109 4.109 21 H 0.098 0.902 22 H 0.079 0.921 23 H 0.111 0.889 24 H 0.238 0.762 25 H 0.237 0.763 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.409 8.012 -0.526 8.723 hybrid contribution 1.000 0.882 -0.575 1.452 sum 4.408 8.894 -1.101 9.987 Atomic orbital electron populations 1.20731 0.88025 1.02882 1.03317 1.20902 0.96948 0.86174 0.88716 1.67693 1.07355 1.31015 1.23955 1.19037 0.85295 0.86321 0.90830 1.41444 1.08983 1.03399 1.84699 1.66933 1.41782 0.97397 1.23733 1.21990 0.92078 0.92714 0.89381 1.22152 0.95264 0.98865 1.04266 1.18222 0.93928 0.84362 0.97401 0.94697 1.21965 1.18458 0.96694 1.25561 0.92636 1.25730 1.00919 0.92233 0.99338 1.70786 1.26962 1.32108 1.25036 0.83568 0.75719 0.75626 0.75579 1.21593 1.21401 1.21042 1.22600 0.93263 0.97343 1.01567 1.21136 0.99737 0.88069 1.01920 0.90156 0.92088 0.88882 0.76191 0.76299 0.91551 0.91236 0.91216 0.90806 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 8.68 36.01 0.31 -1.42 16 2 C 0.22 4.64 6.76 -82.27 -0.56 4.08 16 3 N -0.58 -11.67 10.40 -10.17 -0.11 -11.78 16 4 C 0.54 10.44 8.67 -322.84 -2.80 7.64 16 5 N -0.83 -11.54 9.07 29.76 0.27 -11.27 16 6 N -0.57 -11.74 10.46 -10.01 -0.10 -11.85 16 7 C 0.18 3.92 7.37 -82.03 -0.60 3.32 16 8 C -0.20 -4.47 5.52 -104.23 -0.58 -5.05 16 9 C 0.08 1.91 2.21 -92.00 -0.20 1.71 16 10 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 11 C -0.59 -15.28 7.19 -34.44 -0.25 -15.53 16 12 H 0.06 1.44 6.06 -52.48 -0.32 1.12 16 13 C 0.02 0.60 5.33 -17.82 -0.09 0.50 16 14 N -0.91 -25.66 13.41 55.43 0.74 -24.91 16 15 Si 1.07 24.07 29.90 -169.99 -5.08 18.98 16 16 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.11 -2.37 5.52 -25.25 -0.14 -2.51 16 20 C -0.07 -1.33 6.77 -26.90 -0.18 -1.52 16 21 H 0.08 1.49 7.55 -51.93 -0.39 1.10 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.09 1.83 7.16 -51.93 -0.37 1.46 16 24 H 0.41 4.70 8.94 -40.82 -0.37 4.34 16 25 H 0.41 4.71 8.94 -40.82 -0.37 4.35 16 26 H 0.27 7.48 5.41 -40.82 -0.22 7.26 16 27 H 0.07 1.62 7.91 -51.93 -0.41 1.21 16 28 H 0.07 1.50 6.77 -51.93 -0.35 1.15 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 249.79 15.07 3.76 3.76 Total: -1.00 -29.96 249.79 -8.88 -38.84 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -3.28 Total: 6.99 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -5.09 Total: -8.77 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.80 Total: -59.81 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.08 Total: 18.98 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.96 -8.88 -38.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036400.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.184 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds