Wall clock time and date at job start Mon Mar 30 2020 20:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86794 * 120.00288 * 2 1 4 4 H 1.48503 * 109.46975 * 269.99991 * 3 2 1 5 5 H 1.48501 * 109.47325 * 29.99733 * 3 2 1 6 6 H 1.48499 * 109.47356 * 149.99694 * 3 2 1 7 7 C 1.38801 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99839 * 194.35461 * 7 2 1 9 9 N 1.36836 * 120.00029 * 14.08151 * 7 2 1 10 10 C 1.39353 * 119.99871 * 50.76065 * 9 7 2 11 11 C 1.39439 * 120.88845 * 179.71536 * 10 9 7 12 12 N 1.32234 * 118.98758 * 179.73823 * 11 10 9 13 13 C 1.31819 * 120.91122 * 0.57442 * 12 11 10 14 14 N 1.31822 * 121.97625 * 359.67989 * 13 12 11 15 15 C 1.32228 * 120.91295 * 0.02562 * 14 13 12 16 16 C 1.46500 * 120.00192 * 230.75903 * 9 7 2 17 17 C 1.53781 * 113.61067 * 33.61001 * 16 9 7 18 18 C 1.53960 * 87.01681 * 220.04899 * 17 16 9 19 19 C 1.53779 * 87.11354 * 25.36639 * 18 17 16 20 20 H 0.96998 * 119.99895 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.50652 * 0.02586 * 11 10 9 22 22 H 1.08005 * 119.01361 * 179.69796 * 13 12 11 23 23 H 1.08003 * 120.50793 * 180.02562 * 15 14 13 24 24 H 1.08998 * 112.84933 * 164.80675 * 16 9 7 25 25 H 1.08998 * 113.62119 * 334.56595 * 17 16 9 26 26 H 1.09002 * 113.61115 * 105.47549 * 17 16 9 27 27 H 1.09003 * 113.53296 * 270.81315 * 18 17 16 28 28 H 1.08997 * 113.66531 * 139.93682 * 18 17 16 29 29 H 1.08997 * 113.61412 * 220.09258 * 19 18 17 30 30 H 1.08995 * 113.69429 * 89.19461 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5475 1.4401 0.7001 7 6 2.0098 -1.2021 0.0005 8 1 3.0646 -1.2166 0.2324 9 7 1.3564 -2.3694 -0.2873 10 6 0.5695 -2.4631 -1.4335 11 6 -0.0996 -3.6454 -1.7478 12 7 -0.8404 -3.6910 -2.8422 13 6 -0.9413 -2.6432 -3.6358 14 7 -0.3209 -1.5093 -3.3771 15 6 0.4350 -1.3789 -2.3001 16 6 1.4842 -3.5207 0.6096 17 6 1.6248 -3.1345 2.0915 18 6 2.6661 -4.2630 2.2037 19 6 2.9152 -4.0772 0.6976 20 1 -0.4850 0.8400 -0.0004 21 1 -0.0179 -4.5091 -1.1047 22 1 -1.5509 -2.7159 -4.5244 23 1 0.9401 -0.4466 -2.0944 24 1 0.7288 -4.2851 0.4273 25 1 2.0414 -2.1391 2.2458 26 1 0.7224 -3.3121 2.6765 27 1 2.2336 -5.2305 2.4587 28 1 3.5251 -4.0057 2.8233 29 1 3.0529 -5.0147 0.1589 30 1 3.6850 -3.3404 0.4685 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261164971.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:50 Heat of formation + Delta-G solvation = 64.744256 kcal Electronic energy + Delta-G solvation = -14963.767597 eV Core-core repulsion = 12566.544578 eV Total energy + Delta-G solvation = -2397.223020 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.49168 -39.82998 -36.65777 -34.28273 -33.51603 -30.66080 -27.54371 -26.35148 -25.58611 -24.56275 -23.11222 -20.75453 -18.92157 -18.38367 -17.98102 -17.07179 -16.78089 -15.82601 -15.55618 -15.37144 -14.47569 -14.23162 -14.07468 -13.71213 -13.25209 -13.08243 -12.80193 -12.64336 -12.24020 -12.02360 -11.65567 -11.54934 -11.34268 -11.07135 -10.78816 -10.71898 -9.75774 -8.59270 -7.92308 -6.12130 0.57854 0.74980 1.41825 1.45009 1.52373 2.24125 2.90888 3.03702 3.35932 3.70863 3.87673 3.89176 3.93181 4.08044 4.16343 4.23504 4.56279 4.70474 4.90098 4.90658 5.03879 5.13955 5.20266 5.33558 5.40438 5.44505 5.64294 5.90395 6.14952 6.45711 6.82099 7.26127 7.63921 7.74067 8.66869 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.018770 B = 0.016900 C = 0.009703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.372409 B = 1656.359625 C = 2885.088887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.325 4.325 8 H 0.089 0.911 9 N -0.435 5.435 10 C 0.137 3.863 11 C 0.011 3.989 12 N -0.492 5.492 13 C 0.145 3.855 14 N -0.509 5.509 15 C 0.075 3.925 16 C 0.097 3.903 17 C -0.136 4.136 18 C -0.120 4.120 19 C -0.141 4.141 20 H 0.268 0.732 21 H 0.167 0.833 22 H 0.200 0.800 23 H 0.142 0.858 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 -5.374 3.158 7.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.454 4.454 8 H 0.106 0.894 9 N -0.124 5.124 10 C 0.018 3.982 11 C -0.162 4.162 12 N -0.205 5.205 13 C -0.142 4.142 14 N -0.222 5.222 15 C -0.100 4.100 16 C -0.007 4.007 17 C -0.174 4.174 18 C -0.158 4.158 19 C -0.180 4.180 20 H 0.077 0.923 21 H 0.184 0.816 22 H 0.216 0.784 23 H 0.159 0.841 24 H 0.116 0.884 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.004 -5.303 2.586 7.130 hybrid contribution 0.399 1.307 0.734 1.551 sum 4.403 -3.996 3.320 6.810 Atomic orbital electron populations 1.70150 1.07500 1.28417 1.45279 1.26265 0.95681 1.02731 0.95309 0.85313 0.78949 0.78086 0.78593 1.20161 1.21158 1.17810 1.19303 0.93502 0.83607 1.49012 0.89387 1.42353 1.43106 1.11218 1.15702 1.19835 0.94604 0.95280 0.88520 1.22677 0.99283 0.97094 0.97120 1.67909 1.16128 1.31950 1.04559 1.24418 1.03253 0.85221 1.01318 1.67994 1.07735 1.27190 1.19303 1.22526 0.98795 0.98435 0.90263 1.23019 0.97935 0.89106 0.90649 1.23190 0.99384 0.99804 0.95007 1.22681 0.98902 0.98614 0.95557 1.23258 0.96584 1.00653 0.97489 0.92252 0.81563 0.78374 0.84077 0.88396 0.90701 0.92444 0.88368 0.90300 0.90562 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.86 11.53 21.65 0.25 -46.61 16 2 C 0.00 0.24 3.29 84.86 0.28 0.52 16 3 Si 0.97 39.32 29.58 68.60 2.03 41.35 16 4 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.33 -15.46 6.90 84.05 0.58 -14.88 16 8 H 0.09 4.05 7.33 -2.91 -0.02 4.03 16 9 N -0.44 -19.77 2.77 -486.03 -1.35 -21.12 16 10 C 0.14 6.58 6.01 38.53 0.23 6.81 16 11 C 0.01 0.49 10.55 84.92 0.90 1.39 16 12 N -0.49 -21.68 10.43 -199.40 -2.08 -23.76 16 13 C 0.15 6.37 12.27 180.87 2.22 8.59 16 14 N -0.51 -24.78 10.43 -199.39 -2.08 -26.86 16 15 C 0.08 3.83 9.06 84.92 0.77 4.60 16 16 C 0.10 3.54 4.07 45.52 0.19 3.73 16 17 C -0.14 -4.58 7.52 31.18 0.23 -4.35 16 18 C -0.12 -3.04 8.09 31.18 0.25 -2.78 16 19 C -0.14 -4.24 7.71 31.12 0.24 -4.00 16 20 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 21 H 0.17 6.24 6.05 -2.91 -0.02 6.22 16 22 H 0.20 7.09 8.06 -2.91 -0.02 7.07 16 23 H 0.14 7.60 5.42 -2.91 -0.02 7.58 16 24 H 0.10 3.34 5.90 -2.39 -0.01 3.32 16 25 H 0.07 2.91 6.88 -2.39 -0.02 2.89 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.10 2.03 8.14 -2.39 -0.02 2.02 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.34 7.39 -2.39 -0.02 2.32 16 Total: -1.00 -57.58 249.45 3.81 -53.78 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 1.15 Total: 23.61 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 5.89 Total: -0.38 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -5.26 Total: -118.35 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -57.58 3.81 -53.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164971.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.521 kcal (2) G-P(sol) polarization free energy of solvation -57.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds