Wall clock time and date at job start Mon Mar 30 2020 20:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.57059 * 304.74921 * 10 9 7 12 12 C 1.54507 * 109.57553 * 65.00293 * 10 9 7 13 13 C 1.45868 * 111.58544 * 196.99178 * 12 10 9 14 14 N 1.47805 * 112.91899 * 298.67386 * 13 12 10 15 15 C 1.44265 * 109.45686 * 83.27445 * 14 13 12 16 16 C 1.54067 * 111.97568 * 263.55344 * 15 14 13 17 17 C 1.50466 * 109.56840 * 184.37663 * 10 9 7 18 18 F 1.39900 * 108.76665 * 268.94796 * 17 10 9 19 19 F 1.39892 * 108.77365 * 27.11842 * 17 10 9 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.08997 * 109.05372 * 317.52728 * 12 10 9 24 24 H 1.08993 * 109.05915 * 76.44627 * 12 10 9 25 25 H 1.08990 * 108.79526 * 59.56033 * 13 12 10 26 26 H 1.08995 * 108.79451 * 177.90374 * 13 12 10 27 27 H 1.00903 * 110.99845 * 206.14617 * 14 13 12 28 28 H 1.09001 * 108.98396 * 24.19661 * 15 14 13 29 29 H 1.08998 * 108.98001 * 142.91533 * 15 14 13 30 30 H 1.09004 * 108.91650 * 161.81240 * 16 15 14 31 31 H 1.09003 * 108.92080 * 280.36020 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9276 -3.5591 -0.8444 12 6 3.0494 -3.6557 1.3189 13 6 4.2563 -4.4683 1.2157 14 7 3.9702 -5.8907 0.9336 15 6 3.7772 -6.0699 -0.4849 16 6 2.2858 -6.0500 -0.8708 17 6 1.4985 -4.9637 -0.1087 18 9 1.2193 -5.4309 1.1801 19 9 0.2889 -4.7349 -0.7732 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.3302 -2.6304 1.5595 24 1 2.4228 -4.0490 2.1193 25 1 4.8803 -4.0703 0.4157 26 1 4.8056 -4.4020 2.1548 27 1 4.7118 -6.4834 1.2753 28 1 4.2916 -5.2694 -1.0166 29 1 4.2079 -7.0257 -0.7833 30 1 2.2002 -5.8631 -1.9413 31 1 1.8501 -7.0241 -0.6481 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261235631.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:57 Heat of formation + Delta-G solvation = -129.513643 kcal Electronic energy + Delta-G solvation = -16000.507639 eV Core-core repulsion = 13144.171778 eV Total energy + Delta-G solvation = -2856.335861 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.83079 -47.69773 -39.32447 -35.94961 -33.95957 -33.03900 -29.90203 -27.07113 -25.50430 -23.57259 -21.68943 -20.76021 -18.86571 -18.37558 -17.49748 -17.35020 -16.56232 -16.39610 -15.77827 -15.00005 -14.67670 -14.51512 -14.12883 -14.08924 -14.04018 -13.88061 -13.18831 -12.84580 -12.70597 -12.63501 -12.26144 -12.17851 -11.86113 -11.66220 -11.35009 -11.17120 -10.93671 -10.55062 -9.40349 -8.18672 -6.30561 1.40175 1.43922 1.51581 2.40580 3.00529 3.14110 3.29553 3.55152 3.60724 3.71522 4.12428 4.19737 4.29774 4.49338 4.59379 4.65378 4.80715 4.84681 4.97862 5.04792 5.16835 5.28386 5.37800 5.48682 5.66022 5.79215 6.10526 6.19072 6.68359 6.84453 7.38011 8.93777 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.038265 B = 0.009584 C = 0.008404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.559151 B = 2920.902119 C = 3330.789568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.071 0.929 9 C 0.034 3.966 10 C -0.112 4.112 11 H 0.089 0.911 12 C -0.107 4.107 13 C 0.065 3.935 14 N -0.692 5.692 15 C 0.064 3.936 16 C -0.145 4.145 17 C 0.290 3.710 18 F -0.208 7.208 19 F -0.231 7.231 20 H 0.262 0.738 21 H -0.006 1.006 22 H -0.021 1.021 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.362 0.638 28 H 0.049 0.951 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.962 -11.642 -0.593 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.089 0.911 9 C -0.003 4.003 10 C -0.132 4.132 11 H 0.107 0.893 12 C -0.145 4.145 13 C -0.063 4.063 14 N -0.325 5.325 15 C -0.066 4.066 16 C -0.184 4.184 17 C 0.254 3.746 18 F -0.190 7.190 19 F -0.212 7.212 20 H 0.071 0.929 21 H 0.012 0.988 22 H -0.002 1.002 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.183 0.817 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.115 -11.512 -0.420 15.330 hybrid contribution 0.184 1.171 -0.240 1.210 sum 10.299 -10.341 -0.659 14.609 Atomic orbital electron populations 1.70143 1.08127 1.27788 1.51620 1.26062 0.95697 1.03630 0.94820 0.85452 0.78159 0.77779 0.79370 1.18840 1.21298 1.18852 1.21508 0.93571 0.91272 1.50381 0.91111 1.18953 0.93709 0.93008 0.94638 1.21911 0.98336 0.92000 1.00907 0.89267 1.20513 0.97484 1.00687 0.95786 1.20819 0.95665 0.87853 1.01972 1.59725 1.50687 1.06655 1.15401 1.21656 0.92890 1.03176 0.88889 1.23046 0.97660 0.97168 1.00504 1.21439 0.80668 0.96405 0.76113 1.92894 1.94410 1.90117 1.41536 1.92920 1.50863 1.95949 1.81448 0.92886 0.98794 1.00240 0.91088 0.92460 0.93705 0.89629 0.81712 0.93252 0.87699 0.88272 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.90 13.29 21.45 0.28 -58.62 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.53 -30.01 8.16 25.60 0.21 -29.80 16 8 H 0.07 3.71 7.22 -2.91 -0.02 3.69 16 9 C 0.03 1.89 3.94 29.85 0.12 2.01 16 10 C -0.11 -4.75 1.73 -11.10 -0.02 -4.77 16 11 H 0.09 3.52 7.17 -2.39 -0.02 3.50 16 12 C -0.11 -3.98 4.69 28.92 0.14 -3.84 16 13 C 0.07 1.74 5.80 83.94 0.49 2.22 16 14 N -0.69 -15.98 5.92 -527.72 -3.12 -19.11 16 15 C 0.06 1.36 5.88 87.16 0.51 1.88 16 16 C -0.14 -3.95 5.59 31.39 0.18 -3.78 16 17 C 0.29 11.36 1.74 30.21 0.05 11.41 16 18 F -0.21 -8.70 14.33 44.97 0.64 -8.06 16 19 F -0.23 -10.56 15.20 44.97 0.68 -9.88 16 20 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 21 H -0.01 -0.39 7.18 -2.39 -0.02 -0.40 16 22 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 23 H 0.07 2.87 6.66 -2.39 -0.02 2.86 16 24 H 0.06 2.32 6.57 -2.39 -0.02 2.30 16 25 H 0.04 1.12 7.24 -2.39 -0.02 1.10 16 26 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.36 5.91 8.89 -89.69 -0.80 5.11 16 28 H 0.05 1.05 6.51 -2.39 -0.02 1.04 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -69.93 249.05 2.98 -66.95 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.34 Total: 6.89 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 2.13 Total: -24.49 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -2.84 Total: -77.72 kcal Atomic # 9 Polarization: -19.27 SS G_CDS: 1.33 Total: -17.94 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -69.93 2.98 -66.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261235631.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.564 kcal (2) G-P(sol) polarization free energy of solvation -69.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds