Wall clock time and date at job start Mon Mar 30 2020 20:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 11 11 N 1.46895 * 109.47429 * 300.00221 * 9 7 2 12 12 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 13 13 C 1.38600 * 120.80185 * 79.72309 * 12 9 7 14 14 N 1.32329 * 119.10778 * 179.71936 * 13 12 9 15 15 C 1.31802 * 120.81795 * 0.56808 * 14 13 12 16 16 C 1.50697 * 119.12248 * 179.68297 * 15 14 13 17 17 C 1.52993 * 117.49927 * 8.64385 * 16 15 14 18 18 C 1.53002 * 60.00227 * 252.50979 * 17 16 15 19 19 N 1.31794 * 121.75155 * 359.70761 * 15 14 13 20 20 C 1.32334 * 120.82061 * 359.97438 * 19 15 14 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.00903 * 110.99860 * 176.04974 * 11 9 7 23 23 H 1.00904 * 110.99999 * 299.99652 * 11 9 7 24 24 H 1.08008 * 120.44316 * 0.02562 * 13 12 9 25 25 H 1.09003 * 115.55004 * 154.35195 * 16 15 14 26 26 H 1.08998 * 117.50422 * 359.97438 * 17 16 15 27 27 H 1.08998 * 117.50267 * 145.02319 * 17 16 15 28 28 H 1.09001 * 117.49874 * 252.51117 * 18 17 16 29 29 H 1.08997 * 117.49912 * 107.48780 * 18 17 16 30 30 H 1.07998 * 120.45087 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6206 -2.5586 -0.8820 11 7 0.4115 -2.5746 1.2083 12 6 2.2302 -3.6446 0.0028 13 6 2.8582 -4.0440 1.1720 14 7 3.7080 -5.0576 1.1324 15 6 3.9677 -5.6771 -0.0016 16 6 4.9473 -6.8223 -0.0041 17 6 5.4373 -7.3357 1.3512 18 6 6.3777 -6.5293 0.4532 19 7 3.3938 -5.3214 -1.1335 20 6 2.5286 -4.3207 -1.1698 21 1 -0.4850 0.8401 0.0004 22 1 -0.1525 -3.4112 1.2038 23 1 0.9730 -2.5216 2.0450 24 1 2.6530 -3.5379 2.1038 25 1 4.8136 -7.5536 -0.8013 26 1 5.0515 -6.8450 2.2448 27 1 5.6260 -8.4050 1.4461 28 1 7.1850 -7.0682 -0.0427 29 1 6.6102 -5.5084 0.7560 30 1 2.0622 -4.0340 -2.1007 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263177.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:03 Heat of formation + Delta-G solvation = 52.830020 kcal Electronic energy + Delta-G solvation = -14177.346354 eV Core-core repulsion = 11779.606694 eV Total energy + Delta-G solvation = -2397.739660 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.07784 -38.21428 -36.65579 -34.61794 -33.81908 -31.44247 -28.21973 -26.13552 -25.58185 -23.23533 -23.03048 -21.77918 -18.89800 -18.28745 -17.93247 -16.76630 -16.28255 -15.99884 -15.58735 -15.35540 -15.03876 -14.55508 -14.28161 -13.41050 -13.16844 -12.90093 -12.74871 -12.41250 -12.27434 -11.94805 -11.75034 -11.61738 -11.37462 -11.31414 -10.60500 -10.16792 -9.91418 -8.99578 -8.03150 -6.25148 0.00157 0.10428 1.41962 1.44633 1.52601 2.42706 2.60437 2.88673 3.06888 3.20440 3.30150 3.79523 3.93045 4.06981 4.14271 4.14672 4.22250 4.38976 4.60814 4.78216 4.91445 4.97441 5.17248 5.32864 5.42565 5.48897 5.69614 6.02893 6.07882 6.57095 7.02565 7.12811 7.18262 7.48004 9.00146 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.044395 B = 0.006967 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.551967 B = 4018.105668 C = 4225.188797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.043 3.957 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.041 0.959 9 C 0.273 3.727 10 H 0.027 0.973 11 N -0.817 5.817 12 C -0.191 4.191 13 C 0.140 3.860 14 N -0.522 5.522 15 C 0.305 3.695 16 C -0.116 4.116 17 C -0.142 4.142 18 C -0.150 4.150 19 N -0.527 5.527 20 C 0.136 3.864 21 H 0.258 0.742 22 H 0.314 0.686 23 H 0.325 0.675 24 H 0.170 0.830 25 H 0.137 0.863 26 H 0.093 0.907 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.077 0.923 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.127 -11.394 1.512 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.162 4.162 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.059 0.941 9 C 0.161 3.839 10 H 0.045 0.955 11 N -0.344 5.344 12 C -0.197 4.197 13 C -0.026 4.026 14 N -0.235 5.235 15 C 0.038 3.962 16 C -0.136 4.136 17 C -0.179 4.179 18 C -0.188 4.188 19 N -0.240 5.240 20 C -0.030 4.030 21 H 0.067 0.933 22 H 0.125 0.875 23 H 0.138 0.862 24 H 0.187 0.813 25 H 0.155 0.845 26 H 0.112 0.888 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.096 0.904 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.222 -11.345 1.247 14.066 hybrid contribution -0.026 1.144 0.046 1.145 sum 8.196 -10.201 1.293 13.150 Atomic orbital electron populations 1.70191 1.06848 1.26642 1.47161 1.25574 0.95371 1.01482 0.93739 0.85790 0.78698 0.80282 0.78095 1.20276 1.20786 1.19984 1.21011 0.91779 0.90889 1.54872 0.94055 1.17732 0.87153 0.88130 0.90854 0.95508 1.58984 1.28165 1.43208 1.04015 1.23224 1.01304 0.99705 0.95503 1.23095 0.89654 0.90899 0.98907 1.68092 1.16399 1.08930 1.30112 1.22701 0.94351 0.95238 0.83889 1.20724 0.94060 0.96446 1.02349 1.23058 1.01065 1.01309 0.92476 1.23037 0.91250 1.01536 1.02951 1.68113 1.09677 1.15969 1.30272 1.23344 0.91677 0.89105 0.98887 0.93286 0.87480 0.86156 0.81255 0.84486 0.88832 0.85421 0.85295 0.90444 0.80763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.08 12.78 21.45 0.27 -48.80 16 2 C 0.04 2.31 5.39 84.66 0.46 2.77 16 3 Si 0.95 42.67 29.54 68.60 2.03 44.69 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.55 -28.84 8.71 25.60 0.22 -28.62 16 8 H 0.04 2.22 7.74 -2.92 -0.02 2.20 16 9 C 0.27 12.78 2.88 43.42 0.12 12.91 16 10 H 0.03 1.39 8.04 -2.39 -0.02 1.37 16 11 N -0.82 -35.85 8.39 -174.97 -1.47 -37.32 16 12 C -0.19 -7.76 4.90 -19.69 -0.10 -7.85 16 13 C 0.14 5.31 10.58 84.70 0.90 6.20 16 14 N -0.52 -18.84 9.35 -187.84 -1.76 -20.60 16 15 C 0.31 10.64 7.31 138.75 1.01 11.65 16 16 C -0.12 -3.01 6.24 -11.54 -0.07 -3.08 16 17 C -0.14 -2.93 10.01 30.59 0.31 -2.63 16 18 C -0.15 -3.20 10.23 30.60 0.31 -2.88 16 19 N -0.53 -19.58 10.33 -187.84 -1.94 -21.52 16 20 C 0.14 5.21 10.97 84.70 0.93 6.14 16 21 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 22 H 0.31 12.27 9.06 -89.69 -0.81 11.45 16 23 H 0.33 13.37 7.45 -89.69 -0.67 12.70 16 24 H 0.17 5.94 6.80 -2.91 -0.02 5.92 16 25 H 0.14 3.12 8.14 -2.39 -0.02 3.10 16 26 H 0.09 2.26 7.54 -2.39 -0.02 2.25 16 27 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.13 1.97 8.14 -2.39 -0.02 1.96 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.18 6.10 8.06 -2.91 -0.02 6.07 16 Total: -1.00 -60.91 264.48 0.92 -59.99 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.31 Total: 28.94 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 4.09 Total: -5.39 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -4.89 Total: -128.24 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -60.91 0.92 -59.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263177.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.823 kcal (2) G-P(sol) polarization free energy of solvation -60.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds