Wall clock time and date at job start Mon Mar 30 2020 20:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.34659 * 125.81621 * 2 1 4 4 N 1.37453 * 106.96568 * 180.02562 * 3 2 1 5 5 C 1.38572 * 144.86692 * 180.36523 * 4 3 2 6 6 C 1.32882 * 108.49782 * 179.97438 * 5 4 3 7 7 C 1.50703 * 125.79468 * 179.90074 * 6 5 4 8 8 C 1.50701 * 109.47151 * 84.69319 * 7 6 5 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99694 * 180.27762 * 8 7 6 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 7 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 7 13 13 H 1.48504 * 109.47266 * 60.00049 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47383 * 299.99456 * 12 10 8 16 16 N 1.38315 * 108.40548 * 359.63700 * 6 5 4 17 17 C 1.46506 * 126.13018 * 180.23297 * 16 6 5 18 18 C 1.36123 * 107.11785 * 359.97438 * 4 3 2 19 19 N 1.31710 * 108.26824 * 0.02562 * 18 4 3 20 20 H 1.08994 * 109.46897 * 90.00336 * 1 2 3 21 21 H 1.08996 * 109.46797 * 209.99749 * 1 2 3 22 22 H 1.08996 * 109.47195 * 330.00215 * 1 2 3 23 23 H 1.07995 * 126.51915 * 0.02562 * 3 2 1 24 24 H 1.07994 * 125.75036 * 359.89236 * 5 4 3 25 25 H 1.09000 * 109.47088 * 324.68459 * 7 6 5 26 26 H 1.09007 * 109.46560 * 204.68964 * 7 6 5 27 27 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 28 28 H 1.08993 * 109.47079 * 89.99543 * 17 16 6 29 29 H 1.09005 * 109.46761 * 209.99731 * 17 16 6 30 30 H 1.09002 * 109.46709 * 329.98972 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2951 1.0920 0.0000 4 7 3.5959 0.6478 -0.0006 5 6 4.9261 1.0363 0.0041 6 6 5.6841 -0.0551 -0.0009 7 6 7.1909 -0.0817 -0.0004 8 6 7.6949 0.0339 1.4151 9 1 6.9942 0.1186 2.2325 10 6 9.0506 0.0377 1.6659 11 7 9.9039 -0.0652 0.6704 12 14 9.6755 0.1888 3.4198 13 1 9.1645 -0.9481 4.2271 14 1 11.1603 0.1674 3.4198 15 1 9.1985 1.4667 4.0068 16 7 4.8553 -1.1624 -0.0006 17 6 5.2850 -2.5630 -0.0004 18 6 3.5548 -0.7128 -0.0003 19 7 2.2921 -1.0876 -0.0002 20 1 -0.3633 -0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.9674 2.1210 0.0004 24 1 5.2860 2.0545 0.0095 25 1 7.5692 0.7531 -0.5903 26 1 7.5377 -1.0197 -0.4342 27 1 10.8576 -0.0621 0.8469 28 1 5.3917 -2.9101 1.0273 29 1 4.5405 -3.1715 -0.5140 30 1 6.2423 -2.6494 -0.5145 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261270815.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:05 Heat of formation + Delta-G solvation = 110.008655 kcal Electronic energy + Delta-G solvation = -14307.039974 eV Core-core repulsion = 11911.779766 eV Total energy + Delta-G solvation = -2395.260208 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.68282 -38.18630 -33.58084 -33.41285 -31.05535 -29.76926 -28.56207 -25.78035 -25.32173 -22.97862 -20.67889 -19.85739 -19.22702 -16.64014 -16.32817 -15.74134 -15.43748 -14.74189 -13.73906 -13.65229 -13.22175 -12.92352 -12.76354 -12.49332 -12.26195 -12.01775 -11.82146 -11.47773 -11.00747 -10.80547 -10.60157 -10.27330 -10.02008 -9.55884 -9.47296 -8.61842 -7.57945 -7.00543 -6.23616 -4.29875 2.38454 2.74737 3.08679 3.22436 3.27228 3.31191 3.55797 3.59916 4.30197 4.81558 5.09430 5.13956 5.41388 5.64352 5.70233 5.76775 5.84495 5.87252 5.95157 6.05035 6.25421 6.31583 6.54093 6.93919 7.05218 7.19517 7.42592 7.69582 7.71087 7.99025 8.05671 8.62297 8.73700 9.35971 10.85377 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.049131 B = 0.006849 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.768031 B = 4087.327335 C = 4220.998548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.039 3.961 3 C -0.103 4.103 4 N -0.396 5.396 5 C -0.091 4.091 6 C 0.140 3.860 7 C 0.080 3.920 8 C -0.522 4.522 9 H 0.059 0.941 10 C 0.064 3.936 11 N -0.891 5.891 12 Si 0.900 3.100 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 N -0.480 5.480 17 C 0.104 3.896 18 C 0.380 3.620 19 N -0.523 5.523 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.167 0.833 24 H 0.177 0.823 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.266 0.734 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 -0.017 -1.832 10.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.093 4.093 3 C -0.235 4.235 4 N -0.073 5.073 5 C -0.212 4.212 6 C 0.033 3.967 7 C 0.042 3.958 8 C -0.560 4.560 9 H 0.077 0.923 10 C -0.139 4.139 11 N -0.529 5.529 12 Si 0.727 3.273 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.200 1.200 16 N -0.178 5.178 17 C -0.037 4.037 18 C 0.031 3.969 19 N -0.254 5.254 20 H 0.083 0.917 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.184 0.816 24 H 0.194 0.806 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.064 -0.884 -1.881 10.276 hybrid contribution 0.790 0.999 0.997 1.618 sum -9.274 0.115 -0.884 9.316 Atomic orbital electron populations 1.19947 0.87587 1.02287 1.01829 1.20469 0.95778 0.87427 1.05606 1.21577 0.79584 0.99924 1.22390 1.43547 1.05474 1.08897 1.49333 1.21116 0.77957 1.00113 1.22047 1.21637 0.96021 0.82045 0.97019 1.18078 0.79079 0.99703 0.98948 1.20929 0.91680 1.52061 0.91335 0.92257 1.24960 0.96649 0.94648 0.97596 1.69918 1.02581 1.49251 1.31107 0.86522 0.77629 0.78955 0.84201 1.20091 1.21045 1.20009 1.43473 0.99796 1.07328 1.67192 1.21767 1.01395 0.77303 1.03243 1.20473 0.88093 0.80942 1.07361 1.70093 0.94972 1.29440 1.30893 0.91668 0.91400 0.91463 0.81609 0.80574 0.92964 0.94325 0.92415 0.91302 0.90544 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 10.42 36.01 0.38 -0.35 16 2 C 0.04 0.68 7.08 -82.85 -0.59 0.10 16 3 C -0.10 -1.82 11.94 -16.30 -0.19 -2.02 16 4 N -0.40 -8.09 3.53 -63.97 -0.23 -8.31 16 5 C -0.09 -1.84 11.79 -16.35 -0.19 -2.03 16 6 C 0.14 2.99 6.08 -81.51 -0.50 2.50 16 7 C 0.08 1.87 5.26 -29.03 -0.15 1.72 16 8 C -0.52 -13.57 9.09 -34.44 -0.31 -13.88 16 9 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -24.40 13.29 55.43 0.74 -23.66 16 12 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 N -0.48 -9.80 3.25 -120.61 -0.39 -10.19 16 17 C 0.10 1.73 11.00 59.85 0.66 2.38 16 18 C 0.38 8.09 9.18 -320.12 -2.94 5.15 16 19 N -0.52 -10.79 11.30 -10.21 -0.12 -10.91 16 20 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.17 2.34 8.06 -52.49 -0.42 1.92 16 24 H 0.18 3.18 8.06 -52.49 -0.42 2.76 16 25 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.04 0.92 7.01 -51.93 -0.36 0.56 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.42 7.05 -51.93 -0.37 1.05 16 LS Contribution 264.59 15.07 3.99 3.99 Total: -1.00 -30.31 264.59 -8.62 -38.93 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -3.65 Total: -0.44 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -3.94 Total: -4.84 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.00 Total: -53.08 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.31 -8.62 -38.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270815.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.934 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds