Wall clock time and date at job start Mon Mar 30 2020 20:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.34659 * 125.81621 * 2 1 4 4 N 1.37453 * 106.96568 * 180.02562 * 3 2 1 5 5 C 1.38572 * 144.86692 * 180.36523 * 4 3 2 6 6 C 1.32882 * 108.49782 * 179.97438 * 5 4 3 7 7 C 1.50703 * 125.79468 * 179.90074 * 6 5 4 8 8 C 1.50701 * 109.47151 * 84.69319 * 7 6 5 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99694 * 180.27762 * 8 7 6 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 7 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 7 13 13 H 1.48504 * 109.47266 * 60.00049 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47383 * 299.99456 * 12 10 8 16 16 N 1.38315 * 108.40548 * 359.63700 * 6 5 4 17 17 C 1.46506 * 126.13018 * 180.23297 * 16 6 5 18 18 C 1.36123 * 107.11785 * 359.97438 * 4 3 2 19 19 N 1.31710 * 108.26824 * 0.02562 * 18 4 3 20 20 H 1.08994 * 109.46897 * 90.00336 * 1 2 3 21 21 H 1.08996 * 109.46797 * 209.99749 * 1 2 3 22 22 H 1.08996 * 109.47195 * 330.00215 * 1 2 3 23 23 H 1.07995 * 126.51915 * 0.02562 * 3 2 1 24 24 H 1.07994 * 125.75036 * 359.89236 * 5 4 3 25 25 H 1.09000 * 109.47088 * 324.68459 * 7 6 5 26 26 H 1.09007 * 109.46560 * 204.68964 * 7 6 5 27 27 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 28 28 H 1.08993 * 109.47079 * 89.99543 * 17 16 6 29 29 H 1.09005 * 109.46761 * 209.99731 * 17 16 6 30 30 H 1.09002 * 109.46709 * 329.98972 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2951 1.0920 0.0000 4 7 3.5959 0.6478 -0.0006 5 6 4.9261 1.0363 0.0041 6 6 5.6841 -0.0551 -0.0009 7 6 7.1909 -0.0817 -0.0004 8 6 7.6949 0.0339 1.4151 9 1 6.9942 0.1186 2.2325 10 6 9.0506 0.0377 1.6659 11 7 9.9039 -0.0652 0.6704 12 14 9.6755 0.1888 3.4198 13 1 9.1645 -0.9481 4.2271 14 1 11.1603 0.1674 3.4198 15 1 9.1985 1.4667 4.0068 16 7 4.8553 -1.1624 -0.0006 17 6 5.2850 -2.5630 -0.0004 18 6 3.5548 -0.7128 -0.0003 19 7 2.2921 -1.0876 -0.0002 20 1 -0.3633 -0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.9674 2.1210 0.0004 24 1 5.2860 2.0545 0.0095 25 1 7.5692 0.7531 -0.5903 26 1 7.5377 -1.0197 -0.4342 27 1 10.8576 -0.0621 0.8469 28 1 5.3917 -2.9101 1.0273 29 1 4.5405 -3.1715 -0.5140 30 1 6.2423 -2.6494 -0.5145 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270815.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:05 Heat of formation + Delta-G solvation = 95.798796 kcal Electronic energy + Delta-G solvation = -14307.656160 eV Core-core repulsion = 11911.779766 eV Total energy + Delta-G solvation = -2395.876394 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.17639 -39.67834 -35.38414 -35.02260 -32.60854 -31.24014 -30.06009 -27.35637 -26.80986 -24.73596 -22.17872 -21.35218 -20.72701 -18.60865 -17.80455 -17.31315 -16.89552 -16.61421 -15.25997 -15.02584 -14.66776 -14.41324 -14.25023 -13.87515 -13.77402 -13.38260 -13.19112 -12.99102 -12.76813 -12.60103 -12.15895 -11.92458 -11.76816 -11.41271 -10.94756 -10.63343 -9.08969 -8.50500 -8.23364 -6.37257 0.87318 1.28408 1.42844 1.42863 1.50375 1.55251 2.08426 2.15057 2.40747 3.08697 3.43001 3.71493 4.12542 4.25599 4.39158 4.41902 4.56711 4.64298 4.73284 4.89752 4.96405 5.00393 5.16326 5.24096 5.38403 5.64004 5.67477 5.81515 6.03372 6.27062 6.50347 6.70759 7.15728 7.31986 8.84040 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.049131 B = 0.006849 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.768031 B = 4087.327335 C = 4220.998548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.031 3.969 3 C -0.109 4.109 4 N -0.406 5.406 5 C -0.087 4.087 6 C 0.120 3.880 7 C 0.093 3.907 8 C -0.533 4.533 9 H 0.050 0.950 10 C 0.021 3.979 11 N -0.920 5.920 12 Si 0.959 3.041 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.271 1.271 16 N -0.486 5.486 17 C 0.100 3.900 18 C 0.352 3.648 19 N -0.545 5.545 20 H 0.081 0.919 21 H 0.068 0.932 22 H 0.095 0.905 23 H 0.202 0.798 24 H 0.195 0.805 25 H 0.040 0.960 26 H 0.028 0.972 27 H 0.269 0.731 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.403 0.597 -1.240 11.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.239 4.239 4 N -0.083 5.083 5 C -0.209 4.209 6 C 0.012 3.988 7 C 0.055 3.945 8 C -0.571 4.571 9 H 0.068 0.932 10 C -0.179 4.179 11 N -0.559 5.559 12 Si 0.784 3.216 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.196 1.196 16 N -0.184 5.184 17 C -0.040 4.040 18 C 0.004 3.996 19 N -0.277 5.277 20 H 0.100 0.900 21 H 0.087 0.913 22 H 0.114 0.886 23 H 0.219 0.781 24 H 0.212 0.788 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.400 -0.280 -1.292 11.476 hybrid contribution 1.092 0.814 0.778 1.569 sum -10.308 0.534 -0.513 10.335 Atomic orbital electron populations 1.20118 0.84007 1.03772 1.03368 1.21379 0.97926 0.86540 1.04093 1.22343 0.78454 1.01775 1.21362 1.43801 1.06101 1.08839 1.49583 1.21382 0.78247 1.00617 1.20660 1.21294 0.95211 0.83176 0.99103 1.17756 0.80685 0.98576 0.97514 1.21144 0.91845 1.51884 0.92240 0.93188 1.25682 0.96823 0.94293 1.01152 1.70007 1.02874 1.50075 1.32900 0.85590 0.77248 0.78942 0.79827 1.19791 1.20426 1.19588 1.43647 0.99641 1.08062 1.67067 1.21948 1.02166 0.76165 1.03725 1.20818 0.88507 0.81664 1.08587 1.70114 0.95036 1.31022 1.31509 0.89988 0.91293 0.88609 0.78130 0.78830 0.94152 0.95340 0.92226 0.91092 0.88719 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.19 10.42 71.24 0.74 -0.45 16 2 C 0.03 1.03 7.08 41.39 0.29 1.32 16 3 C -0.11 -3.61 11.94 82.99 0.99 -2.61 16 4 N -0.41 -16.11 3.53 -356.29 -1.26 -17.37 16 5 C -0.09 -3.48 11.79 82.45 0.97 -2.51 16 6 C 0.12 5.16 6.08 40.36 0.25 5.40 16 7 C 0.09 4.43 5.26 29.10 0.15 4.58 16 8 C -0.53 -27.90 9.09 25.60 0.23 -27.67 16 9 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 10 C 0.02 1.08 5.46 84.65 0.46 1.54 16 11 N -0.92 -50.61 13.29 21.45 0.28 -50.32 16 12 Si 0.96 41.66 29.54 68.60 2.03 43.69 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 16 N -0.49 -19.90 3.25 -535.50 -1.74 -21.64 16 17 C 0.10 3.33 11.00 127.77 1.41 4.73 16 18 C 0.35 14.81 9.18 260.55 2.39 17.20 16 19 N -0.54 -21.89 11.30 -186.23 -2.10 -23.99 16 20 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 21 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.20 4.94 8.06 -2.91 -0.02 4.91 16 24 H 0.19 6.82 8.06 -2.91 -0.02 6.80 16 25 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.03 1.40 7.01 -2.38 -0.02 1.38 16 27 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 30 H 0.09 3.00 7.05 -2.39 -0.02 2.98 16 Total: -1.00 -63.80 264.59 6.23 -57.57 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.13 Total: 10.53 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 7.89 Total: 1.54 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -4.81 Total: -113.32 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -63.80 6.23 -57.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270815.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.365 kcal (2) G-P(sol) polarization free energy of solvation -63.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds