Wall clock time and date at job start Mon Mar 30 2020 20:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34660 * 126.51131 * 2 1 4 4 N 1.34144 * 108.35528 * 179.97438 * 3 2 1 5 5 C 1.31700 * 109.28566 * 0.02562 * 4 3 2 6 6 N 1.37612 * 144.39366 * 179.97438 * 5 4 3 7 7 H 0.97005 * 126.12477 * 359.97438 * 6 5 4 8 8 C 1.38324 * 107.74285 * 179.31634 * 6 5 4 9 9 C 1.50700 * 125.79867 * 180.09216 * 8 6 5 10 10 C 1.50699 * 109.46892 * 265.52951 * 9 8 6 11 11 H 1.08004 * 120.00143 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00318 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99660 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00562 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47019 * 89.99908 * 14 12 10 16 16 H 1.48497 * 109.47474 * 210.00314 * 14 12 10 17 17 H 1.48501 * 109.47135 * 330.00303 * 14 12 10 18 18 C 1.32886 * 108.40032 * 0.54317 * 8 6 5 19 19 C 1.50694 * 125.74758 * 179.58678 * 18 8 6 20 20 N 1.36124 * 108.27406 * 359.72866 * 5 4 3 21 21 H 1.09002 * 109.47152 * 90.02542 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.02643 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.02624 * 1 2 3 24 24 H 1.07994 * 125.82377 * 359.97438 * 3 2 1 25 25 H 1.08998 * 109.46958 * 25.52854 * 9 8 6 26 26 H 1.08996 * 109.46853 * 145.53109 * 9 8 6 27 27 H 0.97002 * 120.00141 * 179.97438 * 13 12 10 28 28 H 1.09007 * 109.47533 * 269.97810 * 19 18 8 29 29 H 1.09002 * 109.47216 * 29.97535 * 19 18 8 30 30 H 1.09004 * 109.47313 * 149.97712 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3082 1.0823 0.0000 4 7 3.5829 0.6643 0.0006 5 6 3.6089 -0.6524 0.0004 6 7 4.4319 -1.7552 0.0003 7 1 5.4019 -1.7449 0.0000 8 6 3.6284 -2.8810 0.0158 9 6 4.1111 -4.3086 0.0231 10 6 4.1554 -4.8311 -1.3897 11 1 3.8637 -4.1931 -2.2109 12 6 4.5694 -6.1233 -1.6342 13 7 4.9252 -6.9001 -0.6344 14 14 4.6251 -6.7708 -3.3855 15 1 5.9611 -6.4957 -3.9727 16 1 4.3788 -8.2352 -3.3800 17 1 3.5798 -6.0961 -4.1962 18 6 2.3584 -2.4899 0.0132 19 6 1.1570 -3.3996 0.0179 20 7 2.3249 -1.1047 0.0058 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 0.8902 0.5134 23 1 -0.3633 -0.8898 0.5143 24 1 1.9805 2.1113 -0.0004 25 1 5.1095 -4.3523 0.4582 26 1 3.4296 -4.9194 0.6152 27 1 5.2161 -7.8093 -0.8063 28 1 0.8674 -3.6245 -1.0087 29 1 1.4046 -4.3258 0.5366 30 1 0.3300 -2.9068 0.5290 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279489.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:06 Heat of formation + Delta-G solvation = 96.414513 kcal Electronic energy + Delta-G solvation = -14460.960241 eV Core-core repulsion = 12065.110546 eV Total energy + Delta-G solvation = -2395.849694 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.75807 -38.04584 -33.51495 -33.30386 -30.88895 -30.82444 -28.45116 -25.82712 -25.06861 -23.36816 -21.06736 -19.97749 -18.87747 -16.64184 -16.20244 -15.69665 -15.56580 -14.77607 -13.82968 -13.30376 -13.16719 -12.73323 -12.62030 -12.54928 -12.31532 -12.23445 -11.51359 -11.47372 -11.16210 -10.82607 -10.81169 -10.32207 -10.04337 -9.59401 -9.48045 -8.62567 -7.63107 -6.93321 -6.23805 -4.30127 2.36095 2.92289 3.00160 3.20401 3.27734 3.31921 3.50522 3.62019 4.29883 4.99015 5.11570 5.23944 5.43794 5.47992 5.64506 5.76246 5.87290 6.00575 6.11819 6.25189 6.35452 6.45111 6.51187 6.96962 7.11047 7.19762 7.40989 7.70679 7.79527 7.95416 8.05468 8.61261 8.73731 9.35791 10.84974 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.042956 B = 0.007530 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.679889 B = 3717.629037 C = 3896.419209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.075 4.075 3 C 0.017 3.983 4 N -0.525 5.525 5 C 0.379 3.621 6 N -0.583 5.583 7 H 0.434 0.566 8 C 0.139 3.861 9 C 0.080 3.920 10 C -0.520 4.520 11 H 0.060 0.940 12 C 0.064 3.936 13 N -0.890 5.890 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.272 1.272 18 C -0.058 4.058 19 C -0.060 4.060 20 N -0.389 5.389 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.172 0.828 25 H 0.037 0.963 26 H 0.054 0.946 27 H 0.266 0.734 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.597 7.679 1.772 10.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.189 4.189 3 C -0.133 4.133 4 N -0.254 5.254 5 C 0.029 3.971 6 N -0.203 5.203 7 H 0.274 0.726 8 C 0.031 3.969 9 C 0.042 3.958 10 C -0.559 4.559 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.528 5.528 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.162 4.162 19 C -0.118 4.118 20 N -0.067 5.067 21 H 0.080 0.920 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.190 0.810 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.972 7.921 1.815 10.085 hybrid contribution -0.042 -0.814 -0.994 1.286 sum -6.014 7.107 0.821 9.346 Atomic orbital electron populations 1.20019 0.87815 1.02358 1.01784 1.20424 0.93727 0.84091 1.20636 1.21849 0.87003 0.97768 1.06658 1.70238 1.22202 1.02587 1.30382 1.20478 0.80727 0.88358 1.07496 1.41324 1.08500 1.00963 1.69518 0.72621 1.21366 0.86946 0.90708 0.97866 1.18088 0.97755 0.80965 0.98964 1.20955 1.45821 0.97735 0.91347 0.92196 1.24965 0.94768 0.96622 0.97545 1.69931 1.43885 1.08133 1.30887 0.86472 0.78641 0.78082 0.84200 1.20488 1.20958 1.19701 1.19595 0.96290 0.79450 1.20818 1.20068 0.92164 0.97060 1.02506 1.43466 1.08250 1.05365 1.49650 0.91986 0.90765 0.92290 0.81040 0.94457 0.92795 0.92478 0.91424 0.89696 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.44 36.01 0.38 -0.41 16 2 C -0.07 -1.30 7.25 -81.34 -0.59 -1.88 16 3 C 0.02 0.30 11.77 -17.81 -0.21 0.09 16 4 N -0.52 -10.59 11.30 -14.00 -0.16 -10.75 16 5 C 0.38 7.85 9.64 -320.12 -3.08 4.77 16 6 N -0.58 -11.47 6.27 -9.69 -0.06 -11.53 16 7 H 0.43 7.39 8.96 -40.82 -0.37 7.03 16 8 C 0.14 2.91 6.34 -81.51 -0.52 2.40 16 9 C 0.08 1.86 5.20 -29.04 -0.15 1.70 16 10 C -0.52 -13.38 9.09 -34.44 -0.31 -13.70 16 11 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -24.30 13.29 55.43 0.74 -23.57 16 14 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 C -0.06 -1.16 7.15 -81.39 -0.58 -1.75 16 19 C -0.06 -1.02 10.17 36.00 0.37 -0.65 16 20 N -0.39 -7.75 3.53 -55.61 -0.20 -7.95 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.74 7.14 -51.93 -0.37 0.37 16 24 H 0.17 2.26 8.06 -52.49 -0.42 1.83 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 1.28 7.18 -51.93 -0.37 0.90 16 27 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.42 7.11 -51.93 -0.37 1.05 16 30 H 0.05 0.78 7.14 -51.93 -0.37 0.41 16 LS Contribution 261.94 15.07 3.95 3.95 Total: -1.00 -29.78 261.94 -9.06 -38.84 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.50 Total: 3.49 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -4.80 Total: -7.86 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.32 Total: -53.79 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.78 -9.06 -38.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279489.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.251 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds