Wall clock time and date at job start Mon Mar 30 2020 20:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34660 * 126.51131 * 2 1 4 4 N 1.34144 * 108.35528 * 179.97438 * 3 2 1 5 5 C 1.31700 * 109.28566 * 0.02562 * 4 3 2 6 6 N 1.37612 * 144.39366 * 179.97438 * 5 4 3 7 7 H 0.97005 * 126.12477 * 359.97438 * 6 5 4 8 8 C 1.38324 * 107.74285 * 179.31634 * 6 5 4 9 9 C 1.50700 * 125.79867 * 180.09216 * 8 6 5 10 10 C 1.50699 * 109.46892 * 265.52951 * 9 8 6 11 11 H 1.08004 * 120.00143 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00318 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99660 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00562 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47019 * 89.99908 * 14 12 10 16 16 H 1.48497 * 109.47474 * 210.00314 * 14 12 10 17 17 H 1.48501 * 109.47135 * 330.00303 * 14 12 10 18 18 C 1.32886 * 108.40032 * 0.54317 * 8 6 5 19 19 C 1.50694 * 125.74758 * 179.58678 * 18 8 6 20 20 N 1.36124 * 108.27406 * 359.72866 * 5 4 3 21 21 H 1.09002 * 109.47152 * 90.02542 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.02643 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.02624 * 1 2 3 24 24 H 1.07994 * 125.82377 * 359.97438 * 3 2 1 25 25 H 1.08998 * 109.46958 * 25.52854 * 9 8 6 26 26 H 1.08996 * 109.46853 * 145.53109 * 9 8 6 27 27 H 0.97002 * 120.00141 * 179.97438 * 13 12 10 28 28 H 1.09007 * 109.47533 * 269.97810 * 19 18 8 29 29 H 1.09002 * 109.47216 * 29.97535 * 19 18 8 30 30 H 1.09004 * 109.47313 * 149.97712 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3082 1.0823 0.0000 4 7 3.5829 0.6643 0.0006 5 6 3.6089 -0.6524 0.0004 6 7 4.4319 -1.7552 0.0003 7 1 5.4019 -1.7449 0.0000 8 6 3.6284 -2.8810 0.0158 9 6 4.1111 -4.3086 0.0231 10 6 4.1554 -4.8311 -1.3897 11 1 3.8637 -4.1931 -2.2109 12 6 4.5694 -6.1233 -1.6342 13 7 4.9252 -6.9001 -0.6344 14 14 4.6251 -6.7708 -3.3855 15 1 5.9611 -6.4957 -3.9727 16 1 4.3788 -8.2352 -3.3800 17 1 3.5798 -6.0961 -4.1962 18 6 2.3584 -2.4899 0.0132 19 6 1.1570 -3.3996 0.0179 20 7 2.3249 -1.1047 0.0058 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 0.8902 0.5134 23 1 -0.3633 -0.8898 0.5143 24 1 1.9805 2.1113 -0.0004 25 1 5.1095 -4.3523 0.4582 26 1 3.4296 -4.9194 0.6152 27 1 5.2161 -7.8093 -0.8063 28 1 0.8674 -3.6245 -1.0087 29 1 1.4046 -4.3258 0.5366 30 1 0.3300 -2.9068 0.5290 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279489.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:06 Heat of formation + Delta-G solvation = 81.618187 kcal Electronic energy + Delta-G solvation = -14461.601858 eV Core-core repulsion = 12065.110546 eV Total energy + Delta-G solvation = -2396.491311 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.22462 -39.53076 -35.36783 -34.83802 -32.51161 -32.12709 -30.06020 -27.39108 -26.39786 -25.16891 -22.56657 -21.53476 -20.30907 -18.60615 -17.67495 -17.22913 -17.03297 -16.62797 -15.27179 -14.72223 -14.60724 -14.27707 -13.98096 -13.92266 -13.67661 -13.55314 -13.29503 -12.93823 -12.61944 -12.60063 -12.48557 -11.92259 -11.80028 -11.50309 -10.92428 -10.63508 -9.12987 -8.41026 -8.21314 -6.36439 0.87217 1.40926 1.42599 1.46720 1.49189 1.54361 2.04387 2.18668 2.40870 3.09245 3.59712 3.84801 4.15176 4.32852 4.38226 4.44667 4.69221 4.77669 4.81972 4.86142 5.02306 5.13222 5.15944 5.30626 5.44441 5.67591 5.71116 5.84197 6.03875 6.36625 6.51261 6.71993 7.16684 7.32795 8.84648 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.042956 B = 0.007530 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.679889 B = 3717.629037 C = 3896.419209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.078 4.078 3 C 0.009 3.991 4 N -0.546 5.546 5 C 0.351 3.649 6 N -0.583 5.583 7 H 0.439 0.561 8 C 0.116 3.884 9 C 0.094 3.906 10 C -0.529 4.529 11 H 0.050 0.950 12 C 0.019 3.981 13 N -0.920 5.920 14 Si 0.958 3.042 15 H -0.276 1.276 16 H -0.278 1.278 17 H -0.270 1.270 18 C -0.055 4.055 19 C -0.058 4.058 20 N -0.399 5.399 21 H 0.073 0.927 22 H 0.105 0.895 23 H 0.061 0.939 24 H 0.211 0.789 25 H 0.022 0.978 26 H 0.045 0.955 27 H 0.268 0.732 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 8.605 1.215 11.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.191 4.191 3 C -0.139 4.139 4 N -0.276 5.276 5 C 0.002 3.998 6 N -0.204 5.204 7 H 0.281 0.719 8 C 0.008 3.992 9 C 0.056 3.944 10 C -0.567 4.567 11 H 0.069 0.931 12 C -0.181 4.181 13 N -0.559 5.559 14 Si 0.783 3.217 15 H -0.202 1.202 16 H -0.203 1.203 17 H -0.194 1.194 18 C -0.160 4.160 19 C -0.115 4.115 20 N -0.078 5.078 21 H 0.092 0.908 22 H 0.124 0.876 23 H 0.080 0.920 24 H 0.228 0.772 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.594 8.869 1.259 11.744 hybrid contribution 0.418 -0.989 -0.790 1.333 sum -7.176 7.881 0.469 10.669 Atomic orbital electron populations 1.20197 0.84440 1.04065 1.03044 1.21346 0.95834 0.83126 1.18764 1.22594 0.85883 0.99646 1.05781 1.70227 1.24111 1.02424 1.30849 1.20760 0.81384 0.88791 1.08861 1.41241 1.08817 1.00654 1.69688 0.71941 1.21006 0.87805 0.90087 1.00301 1.17754 0.96708 0.82454 0.97533 1.21161 1.45490 0.97835 0.92247 0.93132 1.25686 0.94456 0.96876 1.01039 1.70018 1.44745 1.08502 1.32676 0.85545 0.78581 0.77646 0.79898 1.20221 1.20313 1.19409 1.20003 0.96790 0.80137 1.19027 1.20135 0.91879 0.96611 1.02907 1.43744 1.08546 1.05596 1.49933 0.90822 0.87609 0.92042 0.77238 0.95975 0.93676 0.92274 0.91265 0.89972 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.28 10.44 71.24 0.74 -0.54 16 2 C -0.08 -2.49 7.25 40.86 0.30 -2.20 16 3 C 0.01 0.30 11.77 83.52 0.98 1.28 16 4 N -0.55 -21.48 11.30 -198.21 -2.24 -23.72 16 5 C 0.35 14.43 9.64 260.55 2.51 16.95 16 6 N -0.58 -23.31 6.27 -184.58 -1.16 -24.47 16 7 H 0.44 15.51 8.96 -92.70 -0.83 14.68 16 8 C 0.12 4.92 6.34 40.36 0.26 5.18 16 9 C 0.09 4.44 5.20 29.10 0.15 4.59 16 10 C -0.53 -27.51 9.09 25.60 0.23 -27.28 16 11 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 12 C 0.02 1.01 5.46 84.65 0.46 1.47 16 13 N -0.92 -50.63 13.29 21.45 0.28 -50.34 16 14 Si 0.96 41.63 29.54 68.60 2.03 43.66 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 C -0.06 -2.19 7.15 40.32 0.29 -1.90 16 19 C -0.06 -1.87 10.17 71.23 0.72 -1.15 16 20 N -0.40 -15.41 3.53 -329.85 -1.16 -16.57 16 21 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.06 1.31 7.14 -2.38 -0.02 1.29 16 24 H 0.21 4.74 8.06 -2.91 -0.02 4.71 16 25 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 2.19 7.18 -2.39 -0.02 2.18 16 27 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 28 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.08 2.70 7.11 -2.39 -0.02 2.69 16 30 H 0.08 2.13 7.14 -2.39 -0.02 2.11 16 Total: -1.00 -62.91 261.94 4.72 -58.19 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.33 Total: 16.84 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 6.65 Total: -3.59 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -4.28 Total: -115.10 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -62.91 4.72 -58.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279489.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.808 kcal (2) G-P(sol) polarization free energy of solvation -62.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds