Wall clock time and date at job start Mon Mar 30 2020 20:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38458 * 125.33517 * 2 1 4 4 C 1.40087 * 125.98684 * 359.96449 * 3 2 1 5 5 H 1.08001 * 120.00440 * 359.97438 * 4 3 2 6 6 C 1.40060 * 119.99663 * 180.02562 * 4 3 2 7 7 N 1.30848 * 120.00531 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99893 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47376 * 89.99904 * 8 6 4 10 10 H 1.48498 * 109.47184 * 210.00002 * 8 6 4 11 11 H 1.48500 * 109.47032 * 330.00206 * 8 6 4 12 12 C 1.39616 * 108.02241 * 179.73891 * 3 2 1 13 13 C 1.39621 * 106.40544 * 0.27376 * 12 3 2 14 14 C 1.33800 * 125.33424 * 180.02562 * 2 1 3 15 15 C 1.50839 * 128.91887 * 0.16104 * 14 2 1 16 16 C 1.53124 * 109.24764 * 159.46252 * 15 14 2 17 17 C 1.53180 * 110.71690 * 52.88631 * 16 15 14 18 18 C 1.47226 * 130.49219 * 180.09058 * 13 12 3 19 19 O 1.21322 * 122.44147 * 348.21091 * 18 13 12 20 20 H 1.09008 * 109.46761 * 269.99622 * 1 2 3 21 21 H 1.08996 * 109.47632 * 29.99911 * 1 2 3 22 22 H 1.08999 * 109.47191 * 150.00512 * 1 2 3 23 23 H 0.96995 * 120.00197 * 180.02562 * 7 6 4 24 24 H 1.08001 * 126.79741 * 180.02562 * 12 3 2 25 25 H 1.09002 * 109.50994 * 279.39365 * 15 14 2 26 26 H 1.08998 * 109.51102 * 39.53346 * 15 14 2 27 27 H 1.08996 * 109.22849 * 173.21241 * 16 15 14 28 28 H 1.09007 * 109.22587 * 292.56704 * 16 15 14 29 29 H 1.08996 * 109.67474 * 54.61219 * 17 16 15 30 30 H 1.09003 * 109.67087 * 175.11064 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2657 1.1295 0.0000 4 6 1.8171 2.4566 -0.0007 5 1 0.7581 2.6687 -0.0017 6 6 2.7420 3.5084 -0.0012 7 7 4.0250 3.2516 -0.0014 8 14 2.1438 5.2781 -0.0028 9 1 1.9847 5.7482 1.3968 10 1 3.1342 6.1347 -0.7031 11 1 0.8369 5.3582 -0.7034 12 6 3.5986 0.7140 0.0060 13 6 3.5765 -0.6820 0.0032 14 6 2.2388 -1.0915 -0.0005 15 6 1.8294 -2.5433 -0.0044 16 6 2.9966 -3.3955 -0.5107 17 6 4.2715 -3.0947 0.2833 18 6 4.6809 -1.6556 0.0088 19 8 5.8333 -1.3338 -0.1920 20 1 -0.3633 -0.0001 1.0278 21 1 -0.3634 0.8899 -0.5138 22 1 -0.3633 -0.8900 -0.5137 23 1 4.6654 3.9800 -0.0014 24 1 4.4736 1.3472 0.0080 25 1 1.5669 -2.8503 1.0080 26 1 0.9695 -2.6773 -0.6607 27 1 2.7452 -4.4503 -0.4003 28 1 3.1699 -3.1770 -1.5645 29 1 4.0797 -3.2245 1.3484 30 1 5.0674 -3.7698 -0.0311 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279921.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:07 Heat of formation + Delta-G solvation = -10.941613 kcal Electronic energy + Delta-G solvation = -14663.826640 eV Core-core repulsion = 12231.028883 eV Total energy + Delta-G solvation = -2432.797757 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.91918 -37.68478 -34.81993 -33.40166 -31.34780 -28.80541 -27.56937 -25.59325 -24.53541 -21.23008 -20.77451 -18.85562 -17.25023 -16.76548 -15.58228 -14.97635 -14.43997 -14.10071 -13.85392 -13.52499 -13.33589 -12.92236 -12.38145 -12.27051 -11.78001 -11.45103 -11.35070 -11.08960 -10.93020 -10.77391 -10.58475 -10.43551 -9.92636 -9.83519 -9.24999 -8.51953 -7.25682 -6.80403 -6.46817 -4.12559 2.49788 3.01940 3.12035 3.15210 3.80306 3.94127 4.24420 4.61147 5.05605 5.31732 5.32799 5.44800 5.52159 5.56385 5.88631 5.95809 5.96169 6.04462 6.09345 6.17662 6.27884 6.52337 6.76389 7.01319 7.18401 7.66275 7.85398 8.05383 8.17710 8.71720 8.83718 8.90305 9.08525 9.26925 10.42147 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.037893 B = 0.009544 C = 0.007727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.754318 B = 2932.975184 C = 3622.594325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.448 5.448 3 C 0.191 3.809 4 C -0.453 4.453 5 H 0.069 0.931 6 C 0.070 3.930 7 N -0.800 5.800 8 Si 0.921 3.079 9 H -0.272 1.272 10 H -0.278 1.278 11 H -0.267 1.267 12 C -0.218 4.218 13 C -0.236 4.236 14 C -0.051 4.051 15 C -0.031 4.031 16 C -0.100 4.100 17 C -0.161 4.161 18 C 0.422 3.578 19 O -0.490 6.490 20 H 0.055 0.945 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.276 0.724 24 H 0.164 0.836 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 -7.092 0.363 9.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.129 5.129 3 C 0.084 3.916 4 C -0.488 4.488 5 H 0.088 0.912 6 C -0.146 4.146 7 N -0.428 5.428 8 Si 0.746 3.254 9 H -0.197 1.197 10 H -0.203 1.203 11 H -0.191 1.191 12 C -0.240 4.240 13 C -0.245 4.245 14 C -0.164 4.164 15 C -0.069 4.069 16 C -0.138 4.138 17 C -0.199 4.199 18 C 0.303 3.697 19 O -0.369 6.369 20 H 0.073 0.927 21 H 0.095 0.905 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.181 0.819 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.644 -6.835 0.251 8.868 hybrid contribution -0.534 0.791 0.061 0.956 sum -6.177 -6.044 0.312 8.648 Atomic orbital electron populations 1.21644 0.80127 1.02526 1.01492 1.43315 1.04432 1.06114 1.59017 1.18275 0.88000 0.84939 1.00398 1.18386 0.93942 0.88370 1.48101 0.91247 1.25600 0.94372 1.01008 0.93615 1.69730 1.01742 1.33547 1.37800 0.86114 0.79133 0.81254 0.78875 1.19734 1.20266 1.19088 1.21740 0.96812 0.90663 1.14780 1.20006 0.91188 0.95582 1.17694 1.20183 0.90325 0.87802 1.18097 1.19818 0.97141 0.89735 1.00192 1.21356 0.93670 0.98687 1.00082 1.22294 0.98628 0.97062 1.01958 1.22129 0.87413 0.89509 0.70633 1.90430 1.22558 1.83611 1.40270 0.92667 0.90510 0.91869 0.91247 0.81854 0.92112 0.92426 0.91583 0.91724 0.89260 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.69 59.84 0.64 2.11 16 2 N -0.45 -10.27 3.13 -116.14 -0.36 -10.63 16 3 C 0.19 5.16 6.67 -83.66 -0.56 4.60 16 4 C -0.45 -12.02 8.96 -38.21 -0.34 -12.36 16 5 H 0.07 1.71 7.07 -52.49 -0.37 1.34 16 6 C 0.07 1.81 5.50 -17.29 -0.10 1.71 16 7 N -0.80 -21.81 10.23 55.56 0.57 -21.24 16 8 Si 0.92 19.24 29.56 -169.99 -5.03 14.21 16 9 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 12 C -0.22 -6.21 9.82 -38.55 -0.38 -6.59 16 13 C -0.24 -5.94 6.08 -105.11 -0.64 -6.58 16 14 C -0.05 -1.13 6.80 -81.04 -0.55 -1.68 16 15 C -0.03 -0.50 5.89 -27.75 -0.16 -0.66 16 16 C -0.10 -1.47 5.80 -26.57 -0.15 -1.62 16 17 C -0.16 -2.69 6.15 -27.09 -0.17 -2.85 16 18 C 0.42 9.66 7.09 -29.96 -0.21 9.45 16 19 O -0.49 -12.72 17.98 5.52 0.10 -12.62 16 20 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 21 H 0.08 1.31 7.27 -51.93 -0.38 0.93 16 22 H 0.06 0.90 7.44 -51.93 -0.39 0.52 16 23 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 24 H 0.16 5.04 5.68 -52.49 -0.30 4.74 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.82 7.60 -51.93 -0.39 0.43 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 253.87 15.07 3.83 3.83 Total: -1.00 -31.45 253.87 -7.01 -38.47 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.50 Total: 2.45 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -2.62 Total: -14.47 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.21 Total: -31.87 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.10 Total: -12.62 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.45 -7.01 -38.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279921.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.524 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds