Wall clock time and date at job start Mon Mar 30 2020 20:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34657 * 125.82400 * 2 1 4 4 N 1.37454 * 106.97117 * 179.97438 * 3 2 1 5 5 C 1.38568 * 144.87245 * 180.02562 * 4 3 2 6 6 C 1.32875 * 108.50373 * 179.97438 * 5 4 3 7 7 C 1.50699 * 125.79903 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.46890 * 335.01340 * 7 6 5 9 9 C 1.53000 * 109.47384 * 95.01324 * 7 6 5 10 10 C 1.50706 * 109.47060 * 215.01293 * 7 6 5 11 11 H 1.07999 * 120.00052 * 359.97438 * 10 7 6 12 12 C 1.37883 * 119.99600 * 179.97438 * 10 7 6 13 13 N 1.31510 * 120.00274 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99538 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.46999 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46920 * 120.00194 * 14 12 10 17 17 H 1.48498 * 109.47145 * 239.99763 * 14 12 10 18 18 N 1.38325 * 108.40583 * 359.97438 * 6 5 4 19 19 H 0.96997 * 126.13143 * 179.74156 * 18 6 5 20 20 C 1.36122 * 107.11440 * 0.02562 * 4 3 2 21 21 N 1.31712 * 108.27030 * 359.97438 * 20 4 3 22 22 H 1.08996 * 109.47443 * 90.00228 * 1 2 3 23 23 H 1.09001 * 109.47456 * 210.00049 * 1 2 3 24 24 H 1.09000 * 109.47162 * 330.00029 * 1 2 3 25 25 H 1.07997 * 126.51242 * 359.95576 * 3 2 1 26 26 H 1.08000 * 125.74772 * 359.96810 * 5 4 3 27 27 H 1.09003 * 109.46853 * 60.00083 * 9 7 6 28 28 H 1.08996 * 109.47175 * 180.02562 * 9 7 6 29 29 H 1.08999 * 109.47004 * 300.00538 * 9 7 6 30 30 H 0.97000 * 119.99912 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2951 1.0918 0.0000 4 7 3.5959 0.6477 0.0006 5 6 4.9261 1.0360 0.0013 6 6 5.6840 -0.0554 0.0021 7 6 7.1907 -0.0822 0.0025 8 1 7.5707 0.8424 -0.4319 9 6 7.6981 -0.2166 1.4397 10 6 7.6725 -1.2552 -0.8120 11 1 6.9589 -1.9154 -1.2825 12 6 9.0243 -1.4853 -0.9565 13 7 9.8931 -0.6811 -0.3840 14 14 9.6214 -2.9388 -1.9666 15 1 8.4531 -3.6825 -2.5025 16 1 10.4552 -2.4490 -3.0937 17 1 10.4307 -3.8397 -1.1073 18 7 4.8551 -1.1628 0.0025 19 1 5.1395 -2.0901 -0.0005 20 6 3.5546 -0.7129 0.0003 21 7 2.2919 -1.0877 0.0002 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9674 2.1209 -0.0007 26 1 5.2861 2.0542 0.0012 27 1 7.3181 -1.1413 1.8741 28 1 8.7879 -0.2356 1.4400 29 1 7.3496 0.6317 2.0288 30 1 10.8441 -0.8433 -0.4853 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261284106.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:13 Heat of formation + Delta-G solvation = 89.681077 kcal Electronic energy + Delta-G solvation = -14330.002352 eV Core-core repulsion = 11933.860674 eV Total energy + Delta-G solvation = -2396.141678 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.16765 -39.60831 -36.10180 -34.11637 -33.01129 -31.43502 -29.41542 -27.34101 -26.94045 -23.57288 -22.47326 -21.96742 -20.46623 -18.54545 -18.01371 -17.14818 -16.90382 -16.68809 -15.23673 -15.02361 -14.50170 -14.33833 -14.20780 -13.83394 -13.53998 -13.06118 -12.98719 -12.88069 -12.48038 -12.30328 -12.23818 -11.82963 -11.80570 -11.06602 -10.92347 -10.54431 -9.04586 -8.57275 -8.17320 -6.31534 0.92897 1.40529 1.45023 1.52271 1.53651 1.55893 2.12165 2.17528 2.40632 3.13757 3.58211 3.89256 4.30784 4.45179 4.52640 4.67930 4.74268 4.93342 4.97724 5.07101 5.09668 5.11638 5.22365 5.47922 5.58318 5.74652 5.90181 5.95899 6.19837 6.40991 6.52501 6.74004 7.19883 7.38194 8.87652 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.052899 B = 0.006952 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.187372 B = 4026.622919 C = 4362.748162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.029 3.971 3 C -0.106 4.106 4 N -0.402 5.402 5 C -0.092 4.092 6 C 0.133 3.867 7 C 0.103 3.897 8 H 0.046 0.954 9 C -0.123 4.123 10 C -0.537 4.537 11 H 0.054 0.946 12 C 0.027 3.973 13 N -0.906 5.906 14 Si 0.952 3.048 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.279 1.279 18 N -0.575 5.575 19 H 0.438 0.562 20 C 0.352 3.648 21 N -0.550 5.550 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.097 0.903 25 H 0.204 0.796 26 H 0.202 0.798 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.658 3.648 1.285 11.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.236 4.236 4 N -0.080 5.080 5 C -0.215 4.215 6 C 0.024 3.976 7 C 0.084 3.916 8 H 0.064 0.936 9 C -0.181 4.181 10 C -0.575 4.575 11 H 0.073 0.927 12 C -0.174 4.174 13 N -0.545 5.545 14 Si 0.778 3.222 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.205 1.205 18 N -0.194 5.194 19 H 0.279 0.721 20 C 0.002 3.998 21 N -0.283 5.283 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.116 0.884 25 H 0.221 0.779 26 H 0.218 0.782 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.718 3.017 1.312 11.211 hybrid contribution 1.222 -0.454 -0.548 1.414 sum -9.496 2.563 0.764 9.866 Atomic orbital electron populations 1.20121 0.84172 1.03809 1.03277 1.21367 0.97907 0.86608 1.04235 1.22340 0.78443 1.01726 1.21101 1.43771 1.06146 1.08621 1.49497 1.21517 0.78209 1.00715 1.21027 1.21265 0.95038 0.83003 0.98301 1.17500 0.80717 0.98246 0.95170 0.93640 1.21644 1.03138 0.98154 0.95162 1.21256 0.92111 1.12081 1.32094 0.92732 1.25544 0.96932 0.98579 0.96297 1.69953 1.02181 1.38341 1.43982 0.85595 0.78250 0.79690 0.78639 1.19701 1.20742 1.20520 1.41308 0.99622 1.09999 1.68497 0.72092 1.20814 0.88506 0.81969 1.08479 1.70141 0.95286 1.31244 1.31581 0.90204 0.91395 0.88406 0.77874 0.78155 0.95466 0.91099 0.94535 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.20 10.42 71.24 0.74 -0.45 16 2 C 0.03 0.95 7.08 41.38 0.29 1.24 16 3 C -0.11 -3.32 11.94 82.99 0.99 -2.33 16 4 N -0.40 -15.08 3.53 -356.29 -1.26 -16.34 16 5 C -0.09 -3.39 11.79 82.45 0.97 -2.42 16 6 C 0.13 5.42 5.82 40.36 0.23 5.66 16 7 C 0.10 4.66 2.67 -12.28 -0.03 4.62 16 8 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 9 C -0.12 -5.35 8.95 71.98 0.64 -4.71 16 10 C -0.54 -26.72 8.34 25.60 0.21 -26.51 16 11 H 0.05 2.70 7.08 -2.91 -0.02 2.68 16 12 C 0.03 1.37 5.30 84.66 0.45 1.82 16 13 N -0.91 -47.56 11.32 21.45 0.24 -47.32 16 14 Si 0.95 40.86 29.54 68.60 2.03 42.88 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 N -0.57 -23.23 5.88 -184.59 -1.09 -24.31 16 19 H 0.44 16.81 8.39 -92.71 -0.78 16.03 16 20 C 0.35 14.45 9.64 260.54 2.51 16.96 16 21 N -0.55 -22.03 11.30 -186.24 -2.10 -24.13 16 22 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.20 4.60 8.06 -2.91 -0.02 4.58 16 26 H 0.20 6.05 8.06 -2.91 -0.02 6.02 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 3.42 6.07 -2.39 -0.01 3.40 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 Total: -1.00 -59.54 259.65 5.21 -54.32 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.37 Total: 21.00 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 7.02 Total: -6.11 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -4.20 Total: -112.10 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Total: -59.54 5.21 -54.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284106.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.006 kcal (2) G-P(sol) polarization free energy of solvation -59.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds