Wall clock time and date at job start Mon Mar 30 2020 20:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32888 * 125.75012 * 2 1 4 4 C 1.50700 * 125.79452 * 359.97438 * 3 2 1 5 5 C 1.50702 * 109.46869 * 269.71302 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.38310 * 108.40808 * 179.71447 * 3 2 1 14 14 C 1.46498 * 126.13515 * 180.22931 * 13 3 2 15 15 C 1.37616 * 107.73751 * 0.26636 * 13 3 2 16 16 N 1.31705 * 144.39207 * 179.97438 * 15 13 3 17 17 C 1.34132 * 109.28762 * 179.97438 * 16 15 13 18 18 C 1.34662 * 108.36003 * 0.02562 * 17 16 15 19 19 N 1.36124 * 107.33582 * 359.97438 * 15 13 3 20 20 H 1.09003 * 109.46849 * 90.00050 * 1 2 3 21 21 H 1.08996 * 109.46787 * 210.00186 * 1 2 3 22 22 H 1.08997 * 109.46907 * 330.00109 * 1 2 3 23 23 H 1.09004 * 109.47210 * 149.71595 * 4 3 2 24 24 H 1.08994 * 109.47551 * 29.71248 * 4 3 2 25 25 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 26 26 H 1.08999 * 109.47100 * 89.99744 * 14 13 3 27 27 H 1.09000 * 109.47386 * 210.00361 * 14 13 3 28 28 H 1.09005 * 109.46930 * 329.99910 * 14 13 3 29 29 H 1.07996 * 125.81753 * 180.02562 * 17 16 15 30 30 H 1.07993 * 126.51368 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2834 1.0785 0.0000 4 6 1.8064 2.5080 -0.0005 5 6 1.6546 2.9863 -1.4216 6 1 1.8806 2.3215 -2.2422 7 6 1.2213 4.2707 -1.6741 8 7 0.9457 5.0801 -0.6748 9 14 1.0259 4.8611 -3.4355 10 1 -0.3524 4.5696 -3.9052 11 1 1.2706 6.3245 -3.4971 12 1 2.0039 4.1586 -4.3045 13 7 3.6036 0.6662 0.0065 14 6 4.7809 1.5381 0.0135 15 6 3.6131 -0.7099 0.0045 16 7 4.3874 -1.7754 0.0067 17 6 3.6236 -2.8780 0.0018 18 6 2.3315 -2.4990 -0.0043 19 7 2.3166 -1.1245 -0.0026 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 2.5329 3.1337 0.5178 24 1 0.8446 2.5703 0.5084 25 1 0.6412 5.9838 -0.8525 26 1 5.0674 1.7534 1.0429 27 1 5.6052 1.0397 -0.4965 28 1 4.5458 2.4700 -0.5008 29 1 3.9837 -3.8962 0.0026 30 1 1.4706 -3.1509 -0.0096 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289361.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:15 Heat of formation + Delta-G solvation = 109.895772 kcal Electronic energy + Delta-G solvation = -14616.691668 eV Core-core repulsion = 12221.426564 eV Total energy + Delta-G solvation = -2395.265103 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.68734 -38.09928 -33.96320 -33.38764 -30.81315 -29.08240 -28.67494 -26.62166 -24.56341 -23.23891 -20.31444 -20.08142 -19.38227 -16.67336 -16.11353 -15.73681 -15.22452 -14.78569 -13.79544 -13.47647 -13.37747 -12.83078 -12.73105 -12.59960 -12.33674 -11.79896 -11.53290 -11.45980 -10.98974 -10.77564 -10.64346 -10.18104 -10.02404 -9.56883 -9.49564 -8.62348 -7.65309 -6.90159 -6.23742 -4.30088 2.41057 2.76802 3.05230 3.20058 3.27462 3.31755 3.56106 3.66713 4.29643 4.91453 5.08682 5.16694 5.48040 5.66413 5.71471 5.75316 5.85830 6.01317 6.10229 6.17280 6.37242 6.45208 6.58651 6.96873 7.05323 7.21434 7.42189 7.70613 7.71812 8.00109 8.05940 8.62705 8.73911 9.35775 10.84920 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.039409 B = 0.008371 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.327063 B = 3344.021742 C = 3578.317086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.064 4.064 3 C 0.140 3.860 4 C 0.081 3.919 5 C -0.520 4.520 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.890 5.890 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.479 5.479 14 C 0.101 3.899 15 C 0.379 3.621 16 N -0.527 5.527 17 C 0.015 3.985 18 C -0.105 4.105 19 N -0.393 5.393 20 H 0.066 0.934 21 H 0.053 0.947 22 H 0.084 0.916 23 H 0.038 0.962 24 H 0.053 0.947 25 H 0.266 0.734 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.173 0.827 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 -7.692 1.699 7.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.167 4.167 3 C 0.033 3.967 4 C 0.043 3.957 5 C -0.558 4.558 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.176 5.176 14 C -0.040 4.040 15 C 0.030 3.970 16 N -0.257 5.257 17 C -0.136 4.136 18 C -0.237 4.237 19 N -0.070 5.070 20 H 0.085 0.915 21 H 0.072 0.928 22 H 0.102 0.898 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.190 0.810 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.143 -7.378 1.747 7.879 hybrid contribution -0.935 0.209 -0.985 1.374 sum 1.207 -7.168 0.762 7.309 Atomic orbital electron populations 1.20038 0.86920 1.02310 1.02419 1.19601 0.94332 0.81371 1.21437 1.21377 0.79197 0.98296 0.97864 1.18077 0.97468 0.81322 0.98841 1.20941 1.46271 0.97720 0.90869 0.92295 1.24958 0.94865 0.96466 0.97534 1.69933 1.44673 1.07319 1.30859 0.86489 0.78758 0.77919 0.84333 1.20377 1.20994 1.19776 1.43429 1.07019 1.00010 1.67156 1.21816 0.85064 0.94536 1.02603 1.20562 0.82440 0.86571 1.07403 1.70214 1.30693 0.94210 1.30567 1.22061 0.88649 0.96893 1.05967 1.21802 1.00075 0.80190 1.21609 1.43593 1.08549 1.05474 1.49415 0.91492 0.92847 0.89762 0.94408 0.92912 0.92480 0.91858 0.90452 0.88321 0.81007 0.81674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.17 36.01 0.37 -0.64 16 2 C -0.06 -1.31 7.15 -81.39 -0.58 -1.89 16 3 C 0.14 3.02 6.08 -81.51 -0.50 2.53 16 4 C 0.08 1.89 4.78 -29.03 -0.14 1.75 16 5 C -0.52 -13.37 9.09 -34.44 -0.31 -13.68 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -24.17 13.29 55.43 0.74 -23.43 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 13 N -0.48 -9.89 3.25 -120.61 -0.39 -10.29 16 14 C 0.10 1.70 10.84 59.85 0.65 2.35 16 15 C 0.38 8.09 9.18 -320.11 -2.94 5.15 16 16 N -0.53 -10.82 11.30 -14.00 -0.16 -10.97 16 17 C 0.01 0.25 11.85 -17.81 -0.21 0.04 16 18 C -0.10 -1.81 12.04 -16.30 -0.20 -2.01 16 19 N -0.39 -8.02 3.53 -59.77 -0.21 -8.23 16 20 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 22 H 0.08 1.42 7.01 -51.93 -0.36 1.06 16 23 H 0.04 0.91 7.79 -51.93 -0.40 0.50 16 24 H 0.05 1.27 7.00 -51.93 -0.36 0.90 16 25 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.10 1.69 7.74 -51.93 -0.40 1.29 16 29 H 0.17 2.22 8.06 -52.49 -0.42 1.80 16 30 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 263.12 15.07 3.97 3.97 Total: -1.00 -30.04 263.12 -8.65 -38.68 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.61 Total: -0.19 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -3.96 Total: -4.82 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.02 Total: -52.92 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.04 -8.65 -38.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289361.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.581 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds