Wall clock time and date at job start Mon Mar 30 2020 20:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86793 * 119.99955 * 2 1 4 4 H 1.48504 * 109.47368 * 239.99364 * 3 2 1 5 5 H 1.48492 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47305 * 119.99649 * 3 2 1 7 7 C 1.39997 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99503 * 180.02562 * 7 2 1 9 9 C 1.41158 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.41245 * 120.17666 * 179.97438 * 9 7 2 11 11 C 1.36852 * 118.05330 * 179.76667 * 10 9 7 12 12 C 1.39968 * 118.25817 * 0.49150 * 11 10 9 13 13 N 1.38395 * 119.93596 * 179.77303 * 12 11 10 14 14 C 1.48527 * 110.99939 * 62.32750 * 13 12 11 15 15 C 1.54932 * 103.22996 * 159.72341 * 14 13 12 16 16 C 1.54598 * 102.91909 * 322.58539 * 15 14 13 17 17 C 1.47901 * 110.99817 * 179.72440 * 13 12 11 18 18 N 1.32963 * 120.13082 * 359.50086 * 12 11 10 19 19 N 1.28400 * 122.11261 * 0.24653 * 18 12 11 20 20 H 0.96996 * 120.00018 * 0.02562 * 1 2 3 21 21 H 1.08005 * 120.97525 * 0.02562 * 10 9 7 22 22 H 1.08005 * 120.87164 * 180.24041 * 11 10 9 23 23 H 1.09000 * 110.67190 * 278.15929 * 14 13 12 24 24 H 1.09009 * 110.66855 * 41.28628 * 14 13 12 25 25 H 1.09002 * 110.72412 * 204.23036 * 15 14 13 26 26 H 1.08998 * 110.72752 * 80.94141 * 15 14 13 27 27 H 1.09007 * 110.31107 * 263.03946 * 16 15 14 28 28 H 1.09005 * 110.31050 * 140.87192 * 16 15 14 29 29 H 1.08988 * 109.91923 * 333.50705 * 17 13 12 30 30 H 1.09003 * 109.91707 * 94.80793 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0958 1.6963 -1.2124 5 1 1.2770 2.7464 -0.0006 6 1 3.0957 1.6964 1.2126 7 6 2.0079 -1.2124 0.0005 8 1 3.0879 -1.2124 0.0010 9 6 1.3021 -2.4348 0.0005 10 6 2.0044 -3.6603 0.0005 11 6 1.2766 -4.8192 0.0055 12 6 -0.1198 -4.7248 -0.0004 13 7 -0.8898 -5.8748 -0.0004 14 6 -0.6557 -6.6721 1.2306 15 6 -1.9141 -7.5720 1.3149 16 6 -3.0424 -6.6350 0.8261 17 6 -2.3320 -5.5470 -0.0004 18 7 -0.7082 -3.5325 -0.0004 19 7 -0.0349 -2.4391 0.0001 20 1 -0.4850 0.8400 -0.0004 21 1 3.0843 -3.6821 0.0010 22 1 1.7670 -5.7815 0.0096 23 1 0.2447 -7.2783 1.1311 24 1 -0.5885 -6.0220 2.1031 25 1 -2.0937 -7.8887 2.3423 26 1 -1.8164 -8.4345 0.6557 27 1 -3.5580 -6.1880 1.6762 28 1 -3.7469 -7.1847 0.2018 29 1 -2.4908 -4.5704 0.4567 30 1 -2.7131 -5.5484 -1.0216 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306297458.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:16 Heat of formation + Delta-G solvation = 61.925544 kcal Electronic energy + Delta-G solvation = -14432.254070 eV Core-core repulsion = 12034.908822 eV Total energy + Delta-G solvation = -2397.345248 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.51907 -37.62196 -33.95376 -32.00826 -31.55367 -28.85033 -28.46884 -25.57719 -22.95578 -22.22518 -20.53942 -20.10605 -17.76605 -16.47357 -15.95003 -15.39511 -14.76884 -14.04317 -13.72048 -13.18419 -13.08174 -12.55102 -12.28190 -11.91999 -11.52588 -11.27039 -11.18323 -11.00974 -10.92685 -10.78451 -10.37149 -10.25682 -9.68481 -9.33317 -8.94206 -8.69805 -7.79156 -7.30731 -6.59904 -4.64590 2.56047 2.62834 3.04040 3.05965 3.11017 3.87228 4.47976 4.70714 5.00123 5.07803 5.30705 5.65805 5.73403 5.80860 5.96652 6.02629 6.03372 6.05295 6.19161 6.35063 6.36748 6.44065 6.55048 6.75422 6.98088 7.01165 7.12494 7.42430 7.69279 8.13017 8.18832 8.50560 8.70203 10.17409 10.81415 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.063117 B = 0.007039 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.515024 B = 3976.716396 C = 4297.237063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.063 3.937 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.418 4.418 8 H 0.087 0.913 9 C 0.173 3.827 10 C -0.192 4.192 11 C -0.105 4.105 12 C 0.085 3.915 13 N -0.447 5.447 14 C 0.040 3.960 15 C -0.122 4.122 16 C -0.131 4.131 17 C 0.038 3.962 18 N -0.258 5.258 19 N -0.251 5.251 20 H 0.279 0.721 21 H 0.114 0.886 22 H 0.111 0.889 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.838 -7.126 2.220 7.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.163 4.163 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.451 4.451 8 H 0.105 0.895 9 C 0.044 3.956 10 C -0.223 4.223 11 C -0.133 4.133 12 C -0.154 4.154 13 N -0.169 5.169 14 C -0.087 4.087 15 C -0.160 4.160 16 C -0.169 4.169 17 C -0.090 4.090 18 N -0.106 5.106 19 N -0.104 5.104 20 H 0.091 0.909 21 H 0.132 0.868 22 H 0.129 0.871 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.280 -6.419 1.747 7.033 hybrid contribution 1.680 0.283 0.583 1.801 sum -0.599 -6.136 2.330 6.591 Atomic orbital electron populations 1.70075 1.07192 1.28678 1.27481 1.26118 0.95016 1.01371 0.93807 0.86272 0.79980 0.80029 0.79935 1.18819 1.20034 1.18848 1.19428 0.94369 0.89087 1.42264 0.89505 1.20019 0.91388 0.92799 0.91406 1.21783 0.99586 0.93151 1.07794 1.20956 0.93047 0.98166 1.01117 1.20770 0.91214 0.90902 1.12493 1.61974 1.04850 1.16051 1.33985 1.23257 0.98248 0.95626 0.91574 1.22470 0.94763 0.98110 1.00693 1.22436 0.97823 0.97063 0.99619 1.22739 0.86997 0.98774 1.00468 1.72962 1.33942 0.95259 1.08486 1.74292 1.05225 1.12816 1.18048 0.90937 0.86780 0.87136 0.90515 0.93796 0.91497 0.91041 0.91829 0.91526 0.90463 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.21 11.48 55.55 0.64 -18.57 16 2 C 0.06 1.59 5.50 -17.33 -0.10 1.49 16 3 Si 0.91 18.27 29.56 -169.99 -5.02 13.24 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.42 -11.00 9.15 -37.82 -0.35 -11.35 16 8 H 0.09 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.17 4.78 6.63 -84.80 -0.56 4.22 16 10 C -0.19 -4.61 9.89 -38.94 -0.39 -5.00 16 11 C -0.10 -2.37 9.49 -39.44 -0.37 -2.75 16 12 C 0.08 2.03 6.28 -154.81 -0.97 1.06 16 13 N -0.45 -9.01 5.29 -169.01 -0.89 -9.91 16 14 C 0.04 0.67 6.05 -1.90 -0.01 0.66 16 15 C -0.12 -1.62 7.06 -24.87 -0.18 -1.80 16 16 C -0.13 -1.86 6.93 -25.37 -0.18 -2.04 16 17 C 0.04 0.71 6.35 -2.75 -0.02 0.69 16 18 N -0.26 -6.99 9.32 31.28 0.29 -6.70 16 19 N -0.25 -7.32 9.08 32.23 0.29 -7.03 16 20 H 0.28 6.80 8.29 -40.82 -0.34 6.46 16 21 H 0.11 2.40 8.06 -52.48 -0.42 1.98 16 22 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 23 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.04 0.79 7.99 -51.92 -0.42 0.37 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.65 6.50 -51.94 -0.34 1.31 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 254.97 15.07 3.84 3.84 Total: -1.00 -30.05 254.97 -7.65 -37.70 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.68 Total: 2.23 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -3.12 Total: -14.81 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.33 Total: -42.21 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.02 Total: 13.24 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.05 -7.65 -37.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306297458.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.626 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds