Wall clock time and date at job start Mon Mar 30 2020 20:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.08000 * 119.99641 * 359.71899 * 7 2 1 9 9 N 1.36931 * 119.99715 * 179.72262 * 7 2 1 10 10 C 1.46506 * 119.99939 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47233 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47143 * 305.00038 * 11 10 9 13 13 C 1.53004 * 109.47091 * 185.00154 * 11 10 9 14 14 C 1.52998 * 109.47091 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47246 * 60.00080 * 14 13 11 16 16 C 1.53004 * 109.46829 * 300.00316 * 15 14 13 17 17 C 1.52997 * 109.46930 * 65.00349 * 11 10 9 18 18 F 1.39902 * 109.46967 * 299.99870 * 17 11 10 19 19 F 1.39899 * 109.47441 * 60.00144 * 17 11 10 20 20 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 21 21 H 0.97000 * 120.00754 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46853 * 300.00510 * 10 9 7 23 23 H 1.09006 * 109.46689 * 59.99917 * 10 9 7 24 24 H 1.08999 * 109.47032 * 299.99951 * 13 11 10 25 25 H 1.08997 * 109.46789 * 60.00398 * 13 11 10 26 26 H 1.09000 * 109.47230 * 179.97438 * 14 13 11 27 27 H 1.09003 * 109.46888 * 300.00315 * 14 13 11 28 28 H 1.09004 * 109.46869 * 59.99516 * 15 14 13 29 29 H 1.08995 * 109.47478 * 179.97438 * 15 14 13 30 30 H 1.09005 * 109.47022 * 180.02562 * 16 15 14 31 31 H 1.08996 * 109.46935 * 299.98990 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 1.4701 -2.1374 -0.0059 9 7 3.3795 -1.2022 -0.0116 10 6 4.1120 -2.4710 -0.0173 11 6 5.6162 -2.1914 -0.0237 12 1 5.8619 -1.5440 -0.8654 13 6 6.3796 -3.5109 -0.1553 14 6 7.8838 -3.2314 -0.1611 15 6 8.2794 -2.5416 1.1461 16 6 7.5160 -1.2222 1.2777 17 6 6.0122 -1.5013 1.2832 18 9 5.3142 -0.2949 1.4035 19 9 5.6970 -2.3323 2.3635 20 1 -0.4850 0.8400 0.0040 21 1 3.8646 -0.3622 -0.0120 22 1 3.8523 -3.0443 0.8726 23 1 3.8449 -3.0407 -0.9074 24 1 6.1339 -4.1583 0.6864 25 1 6.0975 -4.0024 -1.0863 26 1 8.4277 -4.1714 -0.2544 27 1 8.1298 -2.5837 -1.0026 28 1 8.0333 -3.1892 1.9876 29 1 9.3511 -2.3428 1.1422 30 1 7.7981 -0.7305 2.2087 31 1 7.7621 -0.5745 0.4363 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307500882.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:30 Heat of formation + Delta-G solvation = -127.347334 kcal Electronic energy + Delta-G solvation = -15928.134204 eV Core-core repulsion = 13071.892281 eV Total energy + Delta-G solvation = -2856.241923 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.93852 -47.92400 -38.99452 -36.64482 -33.97639 -32.02284 -30.84839 -27.17012 -24.26842 -23.74313 -22.50648 -20.98021 -19.71341 -18.27258 -17.60156 -17.43073 -16.66074 -15.96775 -15.45705 -15.03840 -14.88491 -14.67420 -14.43625 -14.23384 -14.10981 -13.80491 -13.49095 -13.04463 -12.90518 -12.76060 -12.47078 -12.16573 -12.03389 -11.82046 -11.53998 -11.48053 -11.06869 -10.89034 -9.34009 -8.06973 -5.40015 1.33461 1.37765 1.47675 2.45693 2.87010 3.12774 3.24618 3.34321 3.40176 3.70819 4.06744 4.10042 4.21459 4.28736 4.33091 4.42236 4.64015 4.77680 4.87706 4.89047 5.04250 5.11797 5.15245 5.23281 5.28140 5.48377 5.70046 6.16956 7.04404 7.80109 8.00580 9.14505 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.045776 B = 0.009518 C = 0.008779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.524890 B = 2941.026666 C = 3188.640906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.062 4.062 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.238 4.238 8 H 0.056 0.944 9 N -0.760 5.760 10 C 0.150 3.850 11 C -0.130 4.130 12 H 0.108 0.892 13 C -0.108 4.108 14 C -0.117 4.117 15 C -0.115 4.115 16 C -0.153 4.153 17 C 0.276 3.724 18 F -0.217 7.217 19 F -0.213 7.213 20 H 0.259 0.741 21 H 0.371 0.629 22 H 0.017 0.983 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.197 -4.924 -0.027 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.253 4.253 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.176 1.176 7 C -0.369 4.369 8 H 0.074 0.926 9 N -0.409 5.409 10 C 0.024 3.976 11 C -0.150 4.150 12 H 0.127 0.873 13 C -0.146 4.146 14 C -0.155 4.155 15 C -0.153 4.153 16 C -0.191 4.191 17 C 0.240 3.760 18 F -0.198 7.198 19 F -0.194 7.194 20 H 0.067 0.933 21 H 0.207 0.793 22 H 0.035 0.965 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.982 -5.018 0.006 22.548 hybrid contribution -0.738 1.139 0.382 1.410 sum 21.245 -3.879 0.388 21.599 Atomic orbital electron populations 1.69882 1.06996 1.26725 1.59690 1.25483 0.96156 1.01209 1.02489 0.85531 0.79013 0.79682 0.78490 1.19702 1.21941 1.17631 1.19064 0.82828 0.93543 1.41466 0.92643 1.42942 1.02720 1.04385 1.90823 1.20862 0.89787 0.88068 0.98885 1.22416 0.95715 1.00959 0.95885 0.87349 1.21552 0.95768 0.93548 1.03765 1.21621 0.93732 1.02307 0.97799 1.21560 1.01004 0.93894 0.98803 1.22596 0.88648 1.01912 1.05949 1.21698 0.93405 0.75474 0.85435 1.92950 1.82201 1.48190 1.96489 1.92921 1.94642 1.72820 1.59011 0.93253 0.79307 0.96498 0.93935 0.91629 0.89184 0.88928 0.90204 0.91749 0.87954 0.89341 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.76 13.97 21.65 0.30 -65.46 16 2 C -0.06 -3.87 5.50 84.86 0.47 -3.41 16 3 Si 0.95 48.33 27.73 68.60 1.90 50.24 16 4 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 6 H -0.25 -12.16 6.12 99.48 0.61 -11.55 16 7 C -0.24 -14.60 10.47 84.04 0.88 -13.72 16 8 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 9 N -0.76 -38.79 4.80 -343.44 -1.65 -40.44 16 10 C 0.15 6.13 5.59 86.38 0.48 6.61 16 11 C -0.13 -3.86 2.01 -10.79 -0.02 -3.88 16 12 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 13 C -0.11 -2.27 5.08 30.59 0.16 -2.12 16 14 C -0.12 -1.67 5.92 30.59 0.18 -1.48 16 15 C -0.12 -1.74 5.80 30.60 0.18 -1.57 16 16 C -0.15 -3.16 5.45 30.58 0.17 -2.99 16 17 C 0.28 8.65 1.63 30.58 0.05 8.70 16 18 F -0.22 -8.72 13.94 44.97 0.63 -8.10 16 19 F -0.21 -7.49 15.42 44.97 0.69 -6.80 16 20 H 0.26 16.40 8.31 -92.71 -0.77 15.63 16 21 H 0.37 18.26 3.53 -92.71 -0.33 17.93 16 22 H 0.02 0.75 7.67 -2.39 -0.02 0.73 16 23 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.06 1.49 7.80 -2.39 -0.02 1.47 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.10 7.80 -2.39 -0.02 1.08 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -74.53 251.95 5.11 -69.43 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.69 Total: 14.98 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 2.54 Total: -13.85 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -1.34 Total: -105.89 kcal Atomic # 9 Polarization: -16.22 SS G_CDS: 1.32 Total: -14.90 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.90 Total: 50.24 kcal Total: -74.53 5.11 -69.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307500882.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.920 kcal (2) G-P(sol) polarization free energy of solvation -74.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds