Wall clock time and date at job start Mon Mar 30 2020 20:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99554 * 2 1 4 4 H 1.48500 * 109.47382 * 269.99852 * 3 2 1 5 5 H 1.48499 * 109.47324 * 29.99725 * 3 2 1 6 6 H 1.48505 * 109.47247 * 149.99787 * 3 2 1 7 7 C 1.37878 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99871 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99878 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.46899 * 183.83427 * 9 7 2 11 11 C 1.46934 * 110.98610 * 308.38051 * 10 9 7 12 12 C 1.53042 * 109.47830 * 174.18198 * 11 10 9 13 13 C 1.53117 * 109.30994 * 59.15663 * 12 11 10 14 14 C 1.53113 * 109.16576 * 302.32568 * 13 12 11 15 15 C 1.46847 * 110.99877 * 184.15424 * 10 9 7 16 16 H 1.08999 * 109.46369 * 65.81986 * 15 10 9 17 17 C 1.53002 * 109.45550 * 305.84812 * 15 10 9 18 18 F 1.39901 * 109.46906 * 304.95406 * 17 15 10 19 19 F 1.39905 * 109.46909 * 64.95048 * 17 15 10 20 20 H 0.97002 * 120.00805 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47070 * 63.83166 * 9 7 2 22 22 H 1.09003 * 109.47217 * 303.83380 * 9 7 2 23 23 H 1.08994 * 109.51392 * 54.16222 * 11 10 9 24 24 H 1.08994 * 109.44874 * 294.16236 * 11 10 9 25 25 H 1.09001 * 109.49965 * 299.19700 * 12 11 10 26 26 H 1.08993 * 109.50301 * 179.12014 * 12 11 10 27 27 H 1.09001 * 109.52228 * 62.23141 * 13 12 11 28 28 H 1.08996 * 109.52013 * 182.35289 * 13 12 11 29 29 H 1.09001 * 109.50886 * 177.59117 * 14 13 12 30 30 H 1.08996 * 109.50595 * 297.71933 * 14 13 12 31 31 H 1.08998 * 109.47684 * 184.95678 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4463 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0013 -2.5758 -0.0910 11 6 3.3733 -3.4258 0.9298 12 6 3.7950 -4.8808 0.7122 13 6 5.3200 -4.9847 0.8015 14 6 5.9491 -4.0539 -0.2388 15 6 5.4658 -2.6226 0.0060 16 1 5.7744 -2.3001 1.0003 17 6 6.0761 -1.6919 -1.0440 18 9 5.5902 -2.0353 -2.3102 19 9 5.7268 -0.3687 -0.7536 20 1 -0.4851 0.8400 -0.0004 21 1 3.8745 -0.7404 0.9235 22 1 3.8752 -0.6219 -0.8525 23 1 2.2890 -3.3465 0.8527 24 1 3.6918 -3.0995 1.9198 25 1 3.4647 -5.2120 -0.2723 26 1 3.3419 -5.5095 1.4786 27 1 5.6474 -4.6905 1.7987 28 1 5.6272 -6.0120 0.6057 29 1 7.0349 -4.0913 -0.1514 30 1 5.6527 -4.3721 -1.2383 31 1 7.1613 -1.7924 -1.0319 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307583815.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:32 Heat of formation + Delta-G solvation = -100.990474 kcal Electronic energy + Delta-G solvation = -16015.051989 eV Core-core repulsion = 13159.952985 eV Total energy + Delta-G solvation = -2855.099003 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.53521 -46.46711 -38.45114 -33.67525 -32.01837 -31.38165 -27.66643 -25.73155 -23.69465 -21.67680 -20.84536 -19.32813 -17.29100 -16.66402 -16.61131 -16.08283 -14.85710 -14.23486 -13.99239 -13.79779 -13.40606 -13.13847 -12.88846 -12.85130 -12.64983 -12.18799 -12.09925 -11.40952 -11.15407 -10.87413 -10.69715 -10.55983 -10.39534 -10.17233 -9.81105 -9.62266 -8.92196 -8.50286 -7.44163 -6.01628 -3.99259 3.35674 3.41948 3.48919 4.14044 4.47209 4.49146 4.53106 4.79473 5.14989 5.18090 5.32187 5.38259 5.42709 5.65921 5.70142 5.89164 5.99903 6.13491 6.17828 6.22348 6.38481 6.69267 6.73076 6.99788 7.09958 7.59120 7.87705 8.02333 8.65411 9.02941 9.60242 11.10606 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.030239 B = 0.012249 C = 0.009538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.737537 B = 2285.352566 C = 2934.970599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.083 0.917 9 C 0.147 3.853 10 N -0.517 5.517 11 C 0.062 3.938 12 C -0.120 4.120 13 C -0.115 4.115 14 C -0.110 4.110 15 C 0.030 3.970 16 H 0.057 0.943 17 C 0.270 3.730 18 F -0.194 7.194 19 F -0.201 7.201 20 H 0.263 0.737 21 H -0.013 1.013 22 H 0.048 0.952 23 H 0.099 0.901 24 H 0.021 0.979 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.493 -6.989 1.006 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.553 4.553 8 H 0.100 0.900 9 C 0.021 3.979 10 N -0.242 5.242 11 C -0.066 4.066 12 C -0.158 4.158 13 C -0.153 4.153 14 C -0.148 4.148 15 C -0.080 4.080 16 H 0.075 0.925 17 C 0.216 3.784 18 F -0.176 7.176 19 F -0.182 7.182 20 H 0.073 0.927 21 H 0.005 0.995 22 H 0.066 0.934 23 H 0.118 0.882 24 H 0.039 0.961 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.177 -7.017 0.528 14.939 hybrid contribution 0.538 1.437 0.736 1.702 sum 13.715 -5.581 1.264 14.861 Atomic orbital electron populations 1.69889 1.06125 1.26863 1.51121 1.24859 0.94703 0.98880 0.94617 0.86879 0.80429 0.83860 0.78846 1.20031 1.21376 1.18913 1.21134 0.88785 0.94735 1.50694 0.89957 1.20608 0.97065 0.84238 0.96008 1.62016 1.00407 1.13017 1.48738 1.22093 1.01919 0.90802 0.91757 1.21672 0.94730 0.97291 1.02129 1.21516 0.96607 0.98718 0.98434 1.21554 0.98898 0.93195 1.01143 1.22694 0.93210 0.95529 0.96611 0.92509 1.21906 0.97372 0.78234 0.80882 1.92979 1.90505 1.91932 1.42142 1.92968 1.93617 1.38239 1.93399 0.92695 0.99529 0.93418 0.88244 0.96052 0.91216 0.92107 0.92537 0.92049 0.91886 0.90284 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 22.55 27.39 -169.99 -4.66 17.89 16 4 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.69 6.65 56.52 0.38 -6.31 16 7 C -0.52 -14.99 9.06 -34.44 -0.31 -15.30 16 8 H 0.08 2.53 6.19 -52.49 -0.32 2.21 16 9 C 0.15 3.71 2.70 -4.98 -0.01 3.70 16 10 N -0.52 -11.00 4.44 -228.05 -1.01 -12.01 16 11 C 0.06 1.21 5.17 -3.78 -0.02 1.19 16 12 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 13 C -0.12 -1.46 6.00 -26.61 -0.16 -1.62 16 14 C -0.11 -1.46 5.30 -26.65 -0.14 -1.60 16 15 C 0.03 0.50 2.14 -67.72 -0.15 0.36 16 16 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 17 C 0.27 4.42 4.57 37.16 0.17 4.59 16 18 F -0.19 -3.62 16.84 2.25 0.04 -3.58 16 19 F -0.20 -3.98 13.99 2.25 0.03 -3.95 16 20 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 21 H -0.01 -0.34 7.46 -51.93 -0.39 -0.72 16 22 H 0.05 1.26 4.88 -51.93 -0.25 1.01 16 23 H 0.10 2.22 5.73 -51.93 -0.30 1.92 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 249.60 15.07 3.76 3.76 Total: -1.00 -32.02 249.60 -6.16 -38.18 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -4.22 Total: -4.33 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.88 Total: -8.65 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.24 Total: -39.33 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 0.07 Total: -7.53 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.66 Total: 17.89 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.02 -6.16 -38.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307583815.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.807 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds