Wall clock time and date at job start Mon Mar 30 2020 20:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48500 * 109.47100 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47344 * 300.00805 * 3 2 1 6 6 H 1.48502 * 109.46912 * 60.00652 * 3 2 1 7 7 C 1.37874 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99837 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47276 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.47180 * 180.02562 * 10 9 7 12 12 C 1.47444 * 110.99964 * 69.15718 * 11 10 9 13 13 C 1.54313 * 107.23454 * 123.25703 * 12 11 10 14 14 C 1.55262 * 103.08824 * 22.20560 * 13 12 11 15 15 C 1.47845 * 111.00192 * 189.99973 * 11 10 9 16 16 H 1.09006 * 110.36680 * 332.57810 * 15 11 10 17 17 C 1.52997 * 110.37319 * 94.80639 * 15 11 10 18 18 F 1.39904 * 109.46820 * 58.44807 * 17 15 11 19 19 F 1.39901 * 109.47234 * 298.45211 * 17 15 11 20 20 H 0.96996 * 120.00250 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47196 * 60.00518 * 9 7 2 22 22 H 1.08999 * 109.47180 * 300.00493 * 9 7 2 23 23 H 1.08997 * 109.46870 * 60.00507 * 10 9 7 24 24 H 1.08999 * 109.47116 * 300.00162 * 10 9 7 25 25 H 1.08998 * 109.89163 * 242.66497 * 12 11 10 26 26 H 1.09004 * 109.88797 * 3.85204 * 12 11 10 27 27 H 1.08999 * 110.70978 * 140.66913 * 13 12 11 28 28 H 1.09002 * 110.71049 * 263.90395 * 13 12 11 29 29 H 1.08993 * 111.08906 * 206.38806 * 14 13 12 30 30 H 1.08998 * 110.94627 * 82.52641 * 14 13 12 31 31 H 1.09002 * 109.47153 * 178.44787 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2123 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 0.8230 -5.1466 -1.2879 13 6 1.3192 -6.4933 -1.8548 14 6 1.8318 -7.2386 -0.5929 15 6 2.4231 -6.0728 0.2385 16 1 3.4287 -5.8324 -0.1066 17 6 2.4434 -6.4353 1.7248 18 9 1.1478 -6.7555 2.1444 19 9 2.9171 -5.3461 2.4640 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8896 23 1 2.8719 -3.6043 0.8895 24 1 2.8720 -3.6042 -0.8905 25 1 -0.2549 -5.1853 -1.1302 26 1 1.0703 -4.3400 -1.9781 27 1 0.4998 -7.0410 -2.3203 28 1 2.1317 -6.3369 -2.5644 29 1 2.6031 -7.9638 -0.8520 30 1 1.0092 -7.7183 -0.0626 31 1 3.0982 -7.2926 1.8807 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308191428.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:37 Heat of formation + Delta-G solvation = -134.359594 kcal Electronic energy + Delta-G solvation = -15399.676493 eV Core-core repulsion = 12543.130496 eV Total energy + Delta-G solvation = -2856.545997 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.69391 -47.75323 -39.98089 -35.67604 -33.62337 -31.44144 -30.24276 -26.54509 -25.80521 -23.16444 -21.72554 -21.14726 -18.67164 -18.38252 -17.87202 -17.53317 -16.60735 -16.53487 -15.73883 -14.99572 -14.69581 -14.59990 -14.35122 -14.13749 -13.81197 -13.60800 -13.18404 -13.07095 -12.86993 -12.63153 -12.34856 -12.09189 -11.84757 -11.70249 -11.56878 -11.29607 -11.21311 -10.59039 -9.27493 -8.22406 -6.34678 1.37793 1.39260 1.52502 2.38032 2.84890 3.09332 3.10564 3.44362 3.45848 3.89823 4.00320 4.10251 4.21055 4.39630 4.44676 4.54234 4.65748 4.83482 4.94166 4.99784 5.02847 5.10608 5.32532 5.41580 5.60544 5.75240 6.03949 6.11604 6.28135 6.82301 7.34600 8.90201 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.037731 B = 0.007517 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.919618 B = 3723.823240 C = 4086.673720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.039 3.961 10 C 0.077 3.923 11 N -0.545 5.545 12 C 0.040 3.960 13 C -0.128 4.128 14 C -0.109 4.109 15 C 0.006 3.994 16 H 0.091 0.909 17 C 0.268 3.732 18 F -0.215 7.215 19 F -0.226 7.226 20 H 0.264 0.736 21 H -0.007 1.007 22 H -0.017 1.017 23 H 0.060 0.940 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.601 -16.421 -1.912 17.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.002 3.998 10 C -0.051 4.051 11 N -0.269 5.269 12 C -0.087 4.087 13 C -0.166 4.166 14 C -0.147 4.147 15 C -0.103 4.103 16 H 0.109 0.891 17 C 0.214 3.786 18 F -0.197 7.197 19 F -0.208 7.208 20 H 0.073 0.927 21 H 0.011 0.989 22 H 0.001 0.999 23 H 0.079 0.921 24 H 0.045 0.955 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.135 0.865 30 H 0.101 0.899 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.070 -16.256 -1.488 17.416 hybrid contribution 0.376 1.432 -0.360 1.523 sum 6.446 -14.825 -1.848 16.271 Atomic orbital electron populations 1.70130 1.07922 1.27771 1.51389 1.26025 0.95805 1.03529 0.94528 0.85330 0.79020 0.78376 0.77888 1.18453 1.20051 1.20345 1.21636 0.93497 0.92223 1.50976 0.92150 1.18869 0.94120 0.92212 0.94604 1.22165 0.95305 0.88581 0.99028 1.63349 1.28277 1.01761 1.33517 1.22806 0.99040 0.98036 0.88862 1.22768 1.02000 0.94141 0.97706 1.22731 1.01863 0.95439 0.94633 1.23916 0.98298 0.93718 0.94355 0.89114 1.22519 0.79717 0.87641 0.88731 1.92921 1.42414 1.92887 1.91469 1.92937 1.88343 1.59803 1.79679 0.92719 0.98915 0.99851 0.92143 0.95470 0.92053 0.94104 0.88639 0.90272 0.86478 0.89942 0.82097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.97 13.29 21.45 0.28 -58.68 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 45.60 29.54 68.60 2.03 47.62 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.54 -32.53 9.11 25.60 0.23 -32.30 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.04 2.24 4.99 29.85 0.15 2.39 16 10 C 0.08 3.45 4.39 86.30 0.38 3.83 16 11 N -0.54 -20.59 4.71 -860.64 -4.06 -24.65 16 12 C 0.04 1.35 6.20 86.64 0.54 1.89 16 13 C -0.13 -2.80 6.94 31.82 0.22 -2.58 16 14 C -0.11 -2.07 6.47 32.02 0.21 -1.86 16 15 C 0.01 0.17 2.64 45.39 0.12 0.29 16 16 H 0.09 2.20 7.81 -2.38 -0.02 2.19 16 17 C 0.27 6.95 5.11 71.98 0.37 7.31 16 18 F -0.22 -6.76 16.49 44.97 0.74 -6.01 16 19 F -0.23 -7.78 15.98 44.97 0.72 -7.06 16 20 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 21 H -0.01 -0.45 7.09 -2.39 -0.02 -0.47 16 22 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 23 H 0.06 2.77 6.83 -2.39 -0.02 2.75 16 24 H 0.03 1.17 7.98 -2.39 -0.02 1.15 16 25 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.04 1.53 6.88 -2.39 -0.02 1.52 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 29 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.63 7.43 -2.39 -0.02 1.61 16 31 H 0.16 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -72.75 261.57 3.50 -69.25 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: 1.11 Total: 0.15 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 2.68 Total: -20.61 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -3.77 Total: -83.33 kcal Atomic # 9 Polarization: -14.53 SS G_CDS: 1.46 Total: -13.07 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -72.75 3.50 -69.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308191428.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.108 kcal (2) G-P(sol) polarization free energy of solvation -72.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds