Wall clock time and date at job start Mon Mar 30 2020 20:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.41275 * 126.39904 * 182.76622 * 3 2 1 5 5 N 1.30487 * 108.04838 * 179.76350 * 4 3 2 6 6 N 1.39935 * 108.89258 * 0.40948 * 5 4 3 7 7 C 1.46506 * 125.77354 * 179.84884 * 6 5 4 8 8 C 1.52999 * 109.46684 * 304.69367 * 7 6 5 9 9 C 1.53006 * 109.46623 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46957 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99816 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00340 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99773 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00296 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46692 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47025 * 119.99570 * 15 13 11 18 18 H 1.48492 * 109.46854 * 239.99727 * 15 13 11 19 19 C 1.34430 * 108.45900 * 359.58224 * 6 5 4 20 20 H 1.07998 * 125.97519 * 0.02562 * 4 3 2 21 21 H 1.09000 * 109.47212 * 184.69134 * 7 6 5 22 22 H 1.09001 * 109.46577 * 64.69060 * 7 6 5 23 23 H 1.09000 * 109.47486 * 59.99935 * 8 7 6 24 24 H 1.09001 * 109.47362 * 299.99212 * 8 7 6 25 25 H 1.08993 * 109.46955 * 300.00075 * 9 8 7 26 26 H 1.09000 * 109.47050 * 59.99904 * 9 8 7 27 27 H 1.08993 * 109.47839 * 299.99931 * 10 9 8 28 28 H 1.09000 * 109.47160 * 60.00369 * 10 9 8 29 29 H 0.97000 * 120.00540 * 180.02562 * 14 13 11 30 30 H 1.08002 * 126.29645 * 180.20159 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4058 1.1368 0.0549 5 7 4.6445 0.7268 0.0402 6 7 4.6584 -0.6706 -0.0333 7 6 5.8555 -1.5142 -0.0743 8 6 6.7489 -1.0755 -1.2363 9 6 7.9995 -1.9562 -1.2786 10 6 8.8926 -1.5180 -2.4410 11 6 10.1240 -2.3857 -2.4831 12 1 10.2561 -3.1714 -1.7540 13 6 11.0820 -2.1766 -3.4524 14 7 10.9208 -1.2201 -4.3406 15 14 12.6080 -3.2527 -3.5051 16 1 12.5497 -4.2483 -2.4049 17 1 12.6707 -3.9591 -4.8098 18 1 13.8167 -2.4056 -3.3422 19 6 3.3876 -1.1084 -0.0542 20 1 3.0784 2.1647 0.1049 21 1 5.5622 -2.5546 -0.2141 22 1 6.4029 -1.4137 0.8630 23 1 7.0423 -0.0351 -1.0965 24 1 6.2016 -1.1760 -2.1735 25 1 8.5466 -1.8554 -0.3414 26 1 7.7065 -2.9968 -1.4182 27 1 8.3452 -1.6190 -3.3781 28 1 9.1856 -0.4773 -2.3018 29 1 11.5946 -1.0731 -5.0228 30 1 3.0670 -2.1385 -0.1047 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385235186.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:44 Heat of formation + Delta-G solvation = 61.894388 kcal Electronic energy + Delta-G solvation = -13255.035588 eV Core-core repulsion = 10857.688989 eV Total energy + Delta-G solvation = -2397.346599 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.25726 -37.55042 -36.93659 -35.05517 -33.26189 -31.49693 -30.08785 -26.91309 -24.20414 -23.52452 -21.88933 -21.57737 -19.41028 -18.40921 -17.13507 -16.59518 -16.48553 -15.86759 -15.37765 -14.66203 -14.62511 -14.34513 -14.14205 -13.84926 -13.65620 -13.32952 -13.21173 -12.87750 -12.35348 -12.30974 -12.25320 -11.68696 -11.39024 -11.31543 -11.12553 -10.54888 -10.53467 -9.60474 -8.18499 -6.29682 0.58557 1.25630 1.41752 1.42095 1.44552 1.55274 1.75175 2.42490 2.64821 3.14657 3.15259 3.70526 3.92147 4.03084 4.11297 4.37114 4.41340 4.68107 4.68333 4.73192 4.85948 5.13526 5.30254 5.33081 5.46907 5.57380 5.79215 5.89563 5.92025 6.26274 6.60802 6.68203 6.89669 7.40302 8.93583 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.082048 B = 0.003939 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.183043 B = 7105.907006 C = 7185.512295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.323 3.677 3 C -0.217 4.217 4 C 0.099 3.901 5 N -0.327 5.327 6 N -0.354 5.354 7 C 0.132 3.868 8 C -0.119 4.119 9 C -0.094 4.094 10 C 0.020 3.980 11 C -0.540 4.540 12 H 0.066 0.934 13 C -0.005 4.005 14 N -0.937 5.937 15 Si 0.965 3.035 16 H -0.257 1.257 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.143 3.857 20 H 0.215 0.785 21 H 0.139 0.861 22 H 0.102 0.898 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.068 0.932 27 H -0.012 1.012 28 H -0.015 1.015 29 H 0.262 0.738 30 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.357 -1.640 10.153 16.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C 0.009 3.991 3 C -0.233 4.233 4 C -0.090 4.090 5 N -0.146 5.146 6 N -0.131 5.131 7 C 0.013 3.987 8 C -0.157 4.157 9 C -0.132 4.132 10 C -0.018 4.018 11 C -0.578 4.578 12 H 0.084 0.916 13 C -0.202 4.202 14 N -0.577 5.577 15 Si 0.789 3.211 16 H -0.181 1.181 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.012 4.012 20 H 0.231 0.769 21 H 0.157 0.843 22 H 0.120 0.880 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.007 0.993 28 H 0.003 0.997 29 H 0.071 0.929 30 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -12.608 -1.296 10.045 16.172 hybrid contribution 0.536 -0.207 -0.591 0.824 sum -12.072 -1.503 9.454 15.406 Atomic orbital electron populations 1.81297 1.12972 1.08688 1.13690 1.24570 0.91196 0.92364 0.90943 1.16174 0.85224 0.94512 1.27428 1.24463 0.88258 1.00542 0.95742 1.77333 1.21761 0.90207 1.25298 1.48877 1.06645 1.04954 1.52588 1.22191 0.82279 0.93680 1.00540 1.21731 0.96113 1.00197 0.97684 1.21367 0.94274 0.98940 0.98667 1.19039 0.94079 0.94845 0.93788 1.21799 1.05370 1.17018 1.13598 0.91593 1.26028 1.02079 0.96827 0.95311 1.70116 1.36447 1.33364 1.17819 0.85400 0.78613 0.78726 0.78325 1.18108 1.20599 1.20731 1.23620 0.82924 1.01098 0.93589 0.76897 0.84310 0.87996 0.92971 0.92656 0.92132 0.91354 0.99342 0.99699 0.92913 0.75486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.51 18.54 19.00 0.35 -12.15 16 2 C 0.32 6.64 15.82 88.33 1.40 8.04 16 3 C -0.22 -3.78 5.96 -21.34 -0.13 -3.90 16 4 C 0.10 1.84 12.00 85.64 1.03 2.87 16 5 N -0.33 -7.76 12.34 -56.27 -0.69 -8.45 16 6 N -0.35 -6.85 3.65 -346.18 -1.26 -8.12 16 7 C 0.13 2.38 6.49 86.38 0.56 2.94 16 8 C -0.12 -3.38 5.40 30.60 0.17 -3.21 16 9 C -0.09 -3.31 5.15 30.60 0.16 -3.15 16 10 C 0.02 0.99 4.97 29.85 0.15 1.14 16 11 C -0.54 -29.66 9.11 25.60 0.23 -29.42 16 12 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 13 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 14 N -0.94 -56.83 13.29 21.45 0.28 -56.55 16 15 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 16 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 C 0.14 2.02 11.44 84.24 0.96 2.99 16 20 H 0.21 2.67 8.06 -2.91 -0.02 2.64 16 21 H 0.14 1.48 8.06 -2.39 -0.02 1.46 16 22 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 27 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 28 H -0.02 -0.87 8.14 -2.39 -0.02 -0.88 16 29 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 30 H 0.23 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -71.37 277.69 6.82 -64.55 By element: Atomic # 1 Polarization: -4.16 SS G_CDS: 1.13 Total: -3.03 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 4.99 Total: -21.55 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -1.32 Total: -85.27 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -71.37 6.82 -64.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385235186.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.442 kcal (2) G-P(sol) polarization free energy of solvation -71.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds