Wall clock time and date at job start Mon Mar 30 2020 20:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.47153 * 111.00263 * 189.07523 * 10 9 7 12 12 C 1.52918 * 108.52256 * 165.26774 * 11 10 9 13 13 C 1.50698 * 109.92389 * 50.41970 * 12 11 10 14 14 N 1.32592 * 118.48675 * 163.25718 * 13 12 11 15 15 C 1.31941 * 120.36368 * 179.54581 * 14 13 12 16 16 C 1.38405 * 119.81782 * 0.03483 * 15 14 13 17 17 N 1.31919 * 119.85629 * 0.09641 * 16 15 14 18 18 C 1.32650 * 120.39955 * 359.96902 * 17 16 15 19 19 C 1.46650 * 111.00177 * 66.04210 * 10 9 7 20 20 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 21 21 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 22 22 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 23 23 H 1.08993 * 109.62587 * 284.99567 * 11 10 9 24 24 H 1.09004 * 109.62135 * 45.57103 * 11 10 9 25 25 H 1.08997 * 109.39508 * 290.27561 * 12 11 10 26 26 H 1.09001 * 109.31757 * 170.51226 * 12 11 10 27 27 H 1.07999 * 120.09410 * 180.02562 * 15 14 13 28 28 H 1.08003 * 120.07281 * 180.11339 * 16 15 14 29 29 H 1.08994 * 109.30967 * 296.27980 * 19 10 9 30 30 H 1.09006 * 109.30034 * 55.87021 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 7 2.2054 -3.6158 -0.0170 11 6 1.5171 -4.8971 -0.2403 12 6 2.5623 -5.9536 -0.6009 13 6 3.6809 -5.9348 0.4086 14 7 4.4972 -6.9780 0.4676 15 6 5.4944 -6.9967 1.3313 16 6 5.6890 -5.9217 2.1811 17 7 4.8758 -4.8845 2.1248 18 6 3.8720 -4.8647 1.2579 19 6 2.9686 -3.6600 1.2345 20 1 -0.4850 0.8401 0.0040 21 1 0.6240 -2.5614 0.8771 22 1 0.6246 -2.5525 -0.9029 23 1 0.9937 -5.1947 0.6682 24 1 0.8051 -4.7923 -1.0590 25 1 2.9648 -5.7413 -1.5914 26 1 2.0939 -6.9378 -0.6040 27 1 6.1568 -7.8485 1.3753 28 1 6.5051 -5.9318 2.8885 29 1 3.5711 -2.7559 1.3214 30 1 2.2778 -3.7149 2.0759 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595863614.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:50 Heat of formation + Delta-G solvation = 27.808993 kcal Electronic energy + Delta-G solvation = -14396.264807 eV Core-core repulsion = 11997.440154 eV Total energy + Delta-G solvation = -2398.824653 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.27063 -38.90121 -35.68255 -35.06262 -33.20368 -31.49924 -29.23270 -27.01834 -25.33247 -24.16868 -23.57225 -21.29466 -18.76768 -18.48035 -17.51346 -17.07698 -16.66169 -16.03313 -15.73670 -15.41718 -14.92469 -14.54246 -14.01336 -13.80380 -13.33789 -13.17520 -12.93379 -12.56272 -12.54067 -12.48485 -12.28849 -11.95068 -11.77193 -11.31634 -10.62005 -10.02625 -9.96526 -9.17215 -8.21659 -6.31391 -0.17974 0.13540 1.41325 1.43834 1.51861 2.39720 2.67306 2.86457 3.07904 3.12218 3.39070 3.61965 3.69594 4.10447 4.19365 4.34578 4.41216 4.45369 4.54074 4.73149 4.83488 4.85420 5.07271 5.14014 5.24356 5.41354 5.62584 5.98915 6.17495 6.31994 6.51865 6.82059 6.84176 7.38055 8.89090 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.043067 B = 0.007387 C = 0.006563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.989841 B = 3789.782702 C = 4265.547271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.280 1.280 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.208 3.792 10 N -0.538 5.538 11 C 0.045 3.955 12 C -0.049 4.049 13 C 0.081 3.919 14 N -0.457 5.457 15 C 0.055 3.945 16 C 0.049 3.951 17 N -0.468 5.468 18 C 0.070 3.930 19 C 0.125 3.875 20 H 0.266 0.734 21 H -0.030 1.030 22 H 0.020 0.980 23 H 0.033 0.967 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.215 0.785 28 H 0.210 0.790 29 H 0.081 0.919 30 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.963 -13.325 2.482 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.205 1.205 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.083 3.917 10 N -0.263 5.263 11 C -0.083 4.083 12 C -0.087 4.087 13 C -0.056 4.056 14 N -0.173 5.173 15 C -0.108 4.108 16 C -0.113 4.113 17 N -0.184 5.184 18 C -0.067 4.067 19 C -0.004 4.004 20 H 0.075 0.925 21 H -0.012 1.012 22 H 0.038 0.962 23 H 0.051 0.949 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.128 0.872 27 H 0.231 0.769 28 H 0.226 0.774 29 H 0.099 0.901 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.084 -13.103 2.058 16.077 hybrid contribution -0.445 1.013 0.789 1.359 sum 8.639 -12.090 2.847 15.130 Atomic orbital electron populations 1.70054 1.07524 1.28054 1.51417 1.25832 0.95731 1.02930 0.94672 0.85499 0.78265 0.78246 0.79009 1.20534 1.19524 1.19432 1.21414 0.93498 0.91262 1.50606 0.92327 1.19440 0.89763 0.88069 0.94467 1.62336 1.27341 1.03847 1.32806 1.22285 0.95898 0.89132 1.00984 1.20411 0.91767 0.99938 0.96618 1.21991 0.97216 0.89882 0.96554 1.68374 1.03827 1.24770 1.20304 1.24489 0.94960 1.00386 0.90953 1.24450 0.98361 0.89222 0.99303 1.68193 1.03043 1.27734 1.19417 1.21829 0.94970 0.96299 0.93621 1.20404 0.94462 0.94371 0.91208 0.92542 1.01241 0.96223 0.94910 0.88987 0.88684 0.87162 0.76860 0.77360 0.90094 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.53 -30.20 8.56 25.60 0.22 -29.98 16 8 H 0.06 3.33 7.09 -2.91 -0.02 3.31 16 9 C 0.21 11.02 4.71 85.56 0.40 11.42 16 10 N -0.54 -23.68 4.67 -905.71 -4.23 -27.91 16 11 C 0.05 1.59 5.57 86.23 0.48 2.07 16 12 C -0.05 -1.44 6.19 29.82 0.18 -1.25 16 13 C 0.08 2.62 6.65 42.37 0.28 2.90 16 14 N -0.46 -12.82 10.36 -183.43 -1.90 -14.72 16 15 C 0.05 1.14 11.24 84.72 0.95 2.09 16 16 C 0.05 1.12 11.24 84.72 0.95 2.07 16 17 N -0.47 -15.45 10.36 -183.50 -1.90 -17.35 16 18 C 0.07 2.55 6.67 42.33 0.28 2.83 16 19 C 0.12 5.28 5.20 85.57 0.44 5.73 16 20 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 21 H -0.03 -1.71 8.08 -2.39 -0.02 -1.73 16 22 H 0.02 1.09 7.91 -2.39 -0.02 1.08 16 23 H 0.03 1.13 8.05 -2.39 -0.02 1.11 16 24 H 0.09 3.04 7.87 -2.38 -0.02 3.02 16 25 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 28 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.08 3.76 6.95 -2.39 -0.02 3.75 16 30 H 0.04 1.64 8.08 -2.38 -0.02 1.62 16 Total: -1.00 -68.00 255.76 0.07 -67.93 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 1.13 Total: 1.97 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 4.66 Total: -1.26 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -7.75 Total: -115.22 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -68.00 0.07 -67.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595863614.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.739 kcal (2) G-P(sol) polarization free energy of solvation -67.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds