Wall clock time and date at job start Mon Mar 30 2020 20:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39395 * 126.63969 * 2 1 4 4 C 1.41278 * 126.16170 * 359.94761 * 3 2 1 5 5 H 1.07995 * 119.99833 * 5.62957 * 4 3 2 6 6 C 1.39691 * 119.99870 * 185.62787 * 4 3 2 7 7 N 1.31000 * 120.00008 * 353.94568 * 6 4 3 8 8 Si 1.86797 * 120.00104 * 174.22261 * 6 4 3 9 9 H 1.48505 * 109.46835 * 274.73864 * 8 6 4 10 10 H 1.48499 * 109.47062 * 34.73232 * 8 6 4 11 11 H 1.48498 * 109.47360 * 154.73769 * 8 6 4 12 12 N 1.34798 * 107.67311 * 180.20571 * 3 2 1 13 13 C 1.32532 * 109.17782 * 359.63047 * 12 3 2 14 14 C 1.40906 * 131.60065 * 180.11239 * 13 12 3 15 15 C 1.36342 * 119.39622 * 180.30843 * 14 13 12 16 16 F 1.35094 * 120.16553 * 180.02562 * 15 14 13 17 17 C 1.40774 * 119.67589 * 359.97438 * 15 14 13 18 18 C 1.34820 * 120.25755 * 359.97438 * 17 15 14 19 19 N 1.36295 * 126.63080 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.47302 * 90.01723 * 1 2 3 21 21 H 1.09001 * 109.47523 * 210.02302 * 1 2 3 22 22 H 1.08998 * 109.46700 * 330.01845 * 1 2 3 23 23 H 0.96997 * 120.00022 * 180.02562 * 7 6 4 24 24 H 1.08004 * 120.30384 * 0.30932 * 14 13 12 25 25 H 1.07998 * 119.86836 * 179.97438 * 17 15 14 26 26 H 1.07998 * 119.66291 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1185 0.0000 4 6 1.9212 2.4681 -0.0010 5 1 0.8723 2.7088 0.0898 6 6 2.8649 3.4912 -0.1195 7 7 4.1436 3.2071 -0.1103 8 14 2.3035 5.2653 -0.2834 9 1 2.0181 5.5644 -1.7098 10 1 1.0726 5.4713 0.5213 11 1 3.3733 6.1705 0.2078 12 7 3.6137 0.6804 -0.0046 13 6 3.6186 -0.6449 0.0006 14 6 4.6758 -1.5765 0.0011 15 6 4.3925 -2.9102 0.0008 16 9 5.3939 -3.8169 0.0018 17 6 3.0512 -3.3378 0.0006 18 6 2.0503 -2.4346 0.0012 19 7 2.3203 -1.0938 0.0005 20 1 -0.3634 -0.0003 -1.0276 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3633 0.8902 0.5135 23 1 4.7989 3.9176 -0.1922 24 1 5.7011 -1.2373 0.0017 25 1 2.8233 -4.3935 0.0000 26 1 1.0248 -2.7734 0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259879235.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:12 Heat of formation + Delta-G solvation = 11.353456 kcal Electronic energy + Delta-G solvation = -14192.931113 eV Core-core repulsion = 11572.213927 eV Total energy + Delta-G solvation = -2620.717186 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.87253 -42.93888 -37.77079 -35.14418 -34.27459 -31.77941 -30.72400 -28.41207 -26.47818 -23.91347 -22.92762 -21.62161 -19.17057 -18.43759 -17.69510 -17.27094 -16.86703 -16.40562 -16.02035 -15.72472 -14.95952 -14.58633 -14.30063 -13.62618 -13.59520 -13.19040 -13.03493 -12.94014 -12.46589 -12.28462 -12.24467 -11.87013 -11.28345 -11.04751 -10.18074 -9.45203 -8.39475 -8.33540 -6.29337 -0.06253 0.50392 1.42191 1.43128 1.56859 2.09547 2.23800 2.28905 2.75257 3.13318 3.56487 3.62964 4.01709 4.11618 4.26970 4.55506 4.68695 4.87179 4.96304 5.02480 5.03797 5.22991 5.29222 5.56443 5.63712 5.92274 6.23035 6.65117 6.90024 7.01171 7.79533 8.55128 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.044822 B = 0.008476 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.541773 B = 3302.638959 C = 3909.676708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 C -0.228 4.228 3 C 0.196 3.804 4 C -0.468 4.468 5 H 0.097 0.903 6 C 0.021 3.979 7 N -0.801 5.801 8 Si 0.992 3.008 9 H -0.264 1.264 10 H -0.250 1.250 11 H -0.275 1.275 12 N -0.523 5.523 13 C 0.190 3.810 14 C -0.160 4.160 15 C 0.103 3.897 16 F -0.134 7.134 17 C -0.199 4.199 18 C 0.079 3.921 19 N -0.353 5.353 20 H 0.057 0.943 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.276 0.724 24 H 0.140 0.860 25 H 0.193 0.807 26 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.533 -8.423 -0.078 10.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.338 4.338 3 C 0.071 3.929 4 C -0.501 4.501 5 H 0.115 0.885 6 C -0.196 4.196 7 N -0.426 5.426 8 Si 0.812 3.188 9 H -0.189 1.189 10 H -0.173 1.173 11 H -0.200 1.200 12 N -0.248 5.248 13 C -0.051 4.051 14 C -0.183 4.183 15 C 0.079 3.921 16 F -0.113 7.113 17 C -0.222 4.222 18 C -0.046 4.046 19 N -0.027 5.027 20 H 0.076 0.924 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.158 0.842 25 H 0.210 0.790 26 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.654 -7.783 -0.080 9.068 hybrid contribution 0.021 0.261 -0.075 0.272 sum -4.632 -7.522 -0.155 8.835 Atomic orbital electron populations 1.19694 0.85049 1.02306 1.01285 1.21844 0.94910 0.84246 1.32824 1.18911 0.86549 0.93932 0.93509 1.19111 0.95416 0.88423 1.47151 0.88513 1.26949 0.94325 1.05937 0.92377 1.70249 1.02546 1.35600 1.34206 0.85086 0.79041 0.75149 0.79530 1.18851 1.17309 1.20035 1.71581 1.23197 1.03676 1.26315 1.21311 0.84187 0.92123 1.07465 1.19902 0.98170 0.90391 1.09850 1.17164 0.85779 0.84934 1.04237 1.91459 1.59844 1.65894 1.94116 1.20774 0.88529 1.02213 1.10649 1.22042 1.02599 0.79664 1.00307 1.42713 1.08341 1.06060 1.45625 0.92396 0.91117 0.91450 0.91437 0.84213 0.78996 0.78416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.90 10.09 71.24 0.72 -0.18 15 2 C -0.23 -10.78 7.16 42.15 0.30 -10.48 15 3 C 0.20 11.22 6.66 39.71 0.26 11.49 15 4 C -0.47 -26.00 9.11 23.37 0.21 -25.78 15 5 H 0.10 4.88 7.27 -2.91 -0.02 4.86 15 6 C 0.02 1.13 5.48 85.17 0.47 1.60 15 7 N -0.80 -46.74 11.95 21.79 0.26 -46.47 15 8 Si 0.99 39.87 29.56 68.60 2.03 41.89 15 9 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 10 H -0.25 -9.36 7.11 99.48 0.71 -8.66 15 11 H -0.28 -10.77 7.11 99.48 0.71 -10.06 15 12 N -0.52 -31.26 9.54 -186.64 -1.78 -33.04 15 13 C 0.19 9.66 7.77 134.01 1.04 10.70 15 14 C -0.16 -6.87 10.08 22.48 0.23 -6.64 15 15 C 0.10 3.58 7.32 22.45 0.16 3.75 15 16 F -0.13 -4.28 17.27 44.97 0.78 -3.50 15 17 C -0.20 -5.59 9.98 22.10 0.22 -5.36 15 18 C 0.08 2.48 10.81 83.14 0.90 3.38 15 19 N -0.35 -15.55 2.93 -335.46 -0.98 -16.53 15 20 H 0.06 1.87 8.14 -2.39 -0.02 1.85 15 21 H 0.07 1.97 8.12 -2.39 -0.02 1.95 15 22 H 0.07 2.37 7.52 -2.39 -0.02 2.36 15 23 H 0.28 14.70 8.30 -92.71 -0.77 13.93 15 24 H 0.14 5.88 8.06 -2.91 -0.02 5.86 15 25 H 0.19 3.51 8.06 -2.91 -0.02 3.49 15 26 H 0.20 4.26 8.04 -2.91 -0.02 4.24 15 Total: -1.00 -70.92 240.56 6.02 -64.90 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.20 Total: 10.30 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 4.52 Total: -17.54 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -2.51 Total: -96.05 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.89 kcal Total: -70.92 6.02 -64.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879235.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.255 kcal (2) G-P(sol) polarization free energy of solvation -70.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds