Wall clock time and date at job start Mon Mar 30 2020 20:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00035 * 2 1 4 4 H 1.48499 * 109.46924 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47093 * 300.00208 * 3 2 1 6 6 H 1.48495 * 109.47066 * 60.00416 * 3 2 1 7 7 C 1.37879 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99595 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00237 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47317 * 180.02562 * 9 7 2 11 11 N 1.40134 * 126.20802 * 269.97682 * 10 9 7 12 12 C 1.31263 * 107.97657 * 180.02562 * 11 10 9 13 13 N 1.34812 * 131.61061 * 179.97438 * 12 11 10 14 14 C 1.30914 * 120.90234 * 179.97438 * 13 12 11 15 15 C 1.40638 * 120.51642 * 359.97438 * 14 13 12 16 16 C 1.35149 * 119.60969 * 359.97438 * 15 14 13 17 17 N 1.37312 * 119.17006 * 0.03170 * 16 15 14 18 18 C 1.34715 * 131.94656 * 179.97438 * 17 16 15 19 19 O 1.21871 * 126.10202 * 359.94960 * 18 17 16 20 20 H 0.96994 * 119.99701 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47133 * 60.00329 * 9 7 2 22 22 H 1.09002 * 109.47244 * 300.00478 * 9 7 2 23 23 H 1.07996 * 119.74007 * 179.72154 * 14 13 12 24 24 H 1.08002 * 120.19204 * 179.97438 * 15 14 13 25 25 H 1.08007 * 120.41863 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7406 -4.2422 -1.1312 12 6 3.5504 -5.1901 -0.7206 13 7 4.3071 -6.0767 -1.3979 14 6 5.0518 -6.9473 -0.7644 15 6 5.0783 -6.9755 0.6415 16 6 4.3286 -6.0954 1.3413 17 7 3.5528 -5.1886 0.6622 18 6 2.7231 -4.2163 1.0876 19 8 2.4831 -3.9341 2.2487 20 1 -0.4849 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 5.6472 -7.6521 -1.3257 24 1 5.6943 -7.6963 1.1587 25 1 4.3388 -6.1057 2.4213 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259926471.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:18 Heat of formation + Delta-G solvation = 96.086268 kcal Electronic energy + Delta-G solvation = -14263.460002 eV Core-core repulsion = 11666.337068 eV Total energy + Delta-G solvation = -2597.122934 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.68561 -38.72194 -36.60543 -34.53085 -33.41446 -31.91183 -29.56550 -27.77869 -25.25223 -23.26225 -22.95673 -21.18605 -18.42211 -17.99659 -17.08459 -16.42369 -16.18126 -15.20155 -14.77317 -14.48764 -13.94338 -13.64160 -13.16414 -12.69100 -11.87197 -11.78810 -11.49508 -11.22110 -11.05121 -10.84591 -10.46920 -10.25451 -9.99873 -9.53319 -9.00421 -8.60752 -7.50750 -6.22502 -4.29054 0.48677 1.49909 2.06730 3.04988 3.11600 3.24440 3.31190 3.37717 3.57484 4.17547 4.33968 4.40885 4.57578 4.93255 5.12568 5.31796 5.41910 5.85334 6.10398 6.41734 6.86736 7.05773 7.11004 7.52210 7.72376 7.89313 8.16487 8.42319 8.74020 9.36075 10.85835 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.049628 B = 0.007519 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.057704 B = 3723.080485 C = 3831.051924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.280 3.720 10 N -0.388 5.388 11 N -0.235 5.235 12 C 0.390 3.610 13 N -0.455 5.455 14 C 0.219 3.781 15 C -0.265 4.265 16 C 0.190 3.810 17 N -0.516 5.516 18 C 0.632 3.368 19 O -0.541 6.541 20 H 0.268 0.732 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.183 0.817 24 H 0.162 0.838 25 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.760 -14.047 0.858 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.164 3.836 10 N -0.207 5.207 11 N -0.063 5.063 12 C 0.025 3.975 13 N -0.169 5.169 14 C 0.023 3.977 15 C -0.291 4.291 16 C 0.060 3.940 17 N -0.236 5.236 18 C 0.332 3.668 19 O -0.414 6.414 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.200 0.800 24 H 0.180 0.820 25 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.503 -12.662 -0.047 15.252 hybrid contribution 0.824 0.510 1.497 1.784 sum 9.327 -12.152 1.450 15.387 Atomic orbital electron populations 1.69925 1.06005 1.27629 1.49313 1.24907 0.95020 0.99407 0.94373 0.86253 0.79919 0.82388 0.77810 1.19675 1.20542 1.20596 1.21336 0.93726 0.89752 1.52825 0.91900 1.19773 0.84891 0.78647 1.00274 1.50098 1.39735 1.30871 0.99947 1.77757 1.12104 1.06679 1.09751 1.22261 0.99778 0.97972 0.77467 1.68241 1.08286 1.04684 1.35687 1.23453 0.90432 0.91816 0.91999 1.21590 1.07028 1.04711 0.95755 1.22181 0.86757 0.85448 0.99630 1.44733 1.38160 1.29969 1.10784 1.16667 0.82019 0.81162 0.86930 1.91074 1.65975 1.68822 1.15491 0.92238 0.92141 0.92001 0.80003 0.82011 0.80814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.24 15 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 15 3 Si 0.91 21.92 29.54 -169.99 -5.02 16.89 15 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.54 -15.63 9.39 -34.44 -0.32 -15.96 15 8 H 0.06 1.87 7.81 -52.48 -0.41 1.46 15 9 C 0.28 7.61 6.12 -5.20 -0.03 7.58 15 10 N -0.39 -9.63 3.60 -66.35 -0.24 -9.87 15 11 N -0.24 -5.43 12.62 29.94 0.38 -5.05 15 12 C 0.39 7.54 8.97 -321.51 -2.88 4.65 15 13 N -0.45 -7.00 10.50 -13.48 -0.14 -7.14 15 14 C 0.22 2.09 11.27 -17.04 -0.19 1.90 15 15 C -0.26 -2.20 10.04 -39.78 -0.40 -2.60 15 16 C 0.19 2.32 11.01 -16.20 -0.18 2.14 15 17 N -0.52 -9.52 2.92 -68.31 -0.20 -9.71 15 18 C 0.63 14.68 8.70 -86.89 -0.76 13.93 15 19 O -0.54 -13.71 17.86 5.04 0.09 -13.62 15 20 H 0.27 7.30 8.31 -40.82 -0.34 6.96 15 21 H 0.06 1.66 8.14 -51.93 -0.42 1.24 15 22 H 0.06 1.75 8.09 -51.93 -0.42 1.33 15 23 H 0.18 0.82 8.06 -52.49 -0.42 0.40 15 24 H 0.16 0.61 8.06 -52.49 -0.42 0.19 15 25 H 0.17 1.66 8.06 -52.48 -0.42 1.24 15 LS Contribution 239.14 15.07 3.60 3.60 Total: -1.00 -35.12 239.14 -7.31 -42.43 By element: Atomic # 1 Polarization: -4.07 SS G_CDS: -1.66 Total: -5.73 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: -4.86 Total: 13.44 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.53 Total: -57.01 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -35.12 -7.31 -42.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926471.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.514 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds