Wall clock time and date at job start Mon Mar 30 2020 20:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37743 * 119.47170 * 2 1 4 4 C 1.38278 * 120.54147 * 180.02562 * 3 2 1 5 5 C 1.38073 * 119.29652 * 0.16476 * 4 3 2 6 6 C 1.38783 * 120.15173 * 359.97438 * 5 4 3 7 7 C 1.38922 * 121.15199 * 359.67546 * 6 5 4 8 8 C 1.50868 * 115.36336 * 180.50238 * 7 6 5 9 9 H 1.08996 * 109.28081 * 99.53058 * 8 7 6 10 10 C 1.50700 * 109.27902 * 219.04831 * 8 7 6 11 11 H 1.08007 * 119.99900 * 5.81580 * 10 8 7 12 12 C 1.37878 * 120.00542 * 186.09113 * 10 8 7 13 13 N 1.31523 * 119.99459 * 359.72802 * 12 10 8 14 14 Si 1.86793 * 120.00620 * 179.72618 * 12 10 8 15 15 H 1.48503 * 109.46885 * 59.99880 * 14 12 10 16 16 H 1.48496 * 109.47252 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.47064 * 300.00264 * 14 12 10 18 18 C 1.54136 * 110.50087 * 339.32725 * 8 7 6 19 19 S 1.77437 * 130.57121 * 179.32295 * 6 5 4 20 20 H 1.08994 * 109.46989 * 236.75154 * 1 2 3 21 21 H 1.09006 * 109.46738 * 356.75167 * 1 2 3 22 22 H 1.09000 * 109.47106 * 116.74920 * 1 2 3 23 23 H 1.08000 * 119.73183 * 0.04174 * 3 2 1 24 24 H 1.08001 * 120.35627 * 180.15068 * 4 3 2 25 25 H 1.07992 * 119.92588 * 180.02562 * 5 4 3 26 26 H 0.96993 * 119.99618 * 179.97438 * 13 12 10 27 27 H 1.09007 * 111.10084 * 146.29078 * 18 8 7 28 28 H 1.09004 * 111.10084 * 270.38585 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1847 1.1992 0.0000 4 6 3.5673 1.2250 -0.0005 5 6 4.2653 0.0337 -0.0045 6 6 3.5822 -1.1744 -0.0074 7 6 2.1936 -1.2149 0.0003 8 6 1.5874 -2.5965 0.0080 9 1 1.2924 -2.8544 1.0250 10 6 0.3710 -2.6110 -0.8814 11 1 0.1227 -1.7408 -1.4711 12 6 -0.4283 -3.7330 -0.9382 13 7 -0.1260 -4.7926 -0.2202 14 14 -1.9404 -3.7483 -2.0348 15 1 -1.5312 -3.5275 -3.4452 16 1 -2.6242 -5.0611 -1.9169 17 1 -2.8682 -2.6678 -1.6137 18 6 2.6047 -3.6351 -0.5041 19 16 4.1875 -2.8422 -0.0286 20 1 -0.3633 -0.5634 0.8594 21 1 -0.3633 1.0261 0.0582 22 1 -0.3633 -0.4625 -0.9177 23 1 1.6318 2.1269 0.0007 24 1 4.0956 2.1670 0.0019 25 1 5.3451 0.0420 -0.0046 26 1 -0.6885 -5.5818 -0.2598 27 1 2.4774 -4.5919 0.0025 28 1 2.5343 -3.7533 -1.5854 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260032318.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:44 Heat of formation + Delta-G solvation = 17.943482 kcal Electronic energy + Delta-G solvation = -12712.609374 eV Core-core repulsion = 10626.098378 eV Total energy + Delta-G solvation = -2086.510996 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.90518 -34.67936 -32.02775 -31.77652 -28.58921 -26.43176 -25.16183 -22.57772 -21.14948 -19.84674 -16.76671 -16.33416 -15.03174 -14.70718 -14.53674 -13.77970 -13.66135 -12.82658 -12.46893 -12.37156 -11.80363 -11.51509 -11.28779 -11.16663 -11.05188 -10.83530 -10.77716 -10.48528 -9.74914 -9.46621 -9.07835 -8.86832 -8.54433 -7.77088 -6.64893 -6.22285 -4.26458 1.88081 1.99174 2.54381 3.18284 3.26517 3.27536 3.29933 4.24551 4.34920 5.10929 5.41270 5.47258 5.58279 5.95865 5.99497 6.10368 6.33265 6.39600 6.48927 6.54824 6.60802 6.87392 6.93547 7.00328 7.09165 7.37967 7.41467 7.60853 7.76561 8.09562 8.73978 9.37392 10.86639 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.011980 C = 0.009064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.659862 B = 2336.616397 C = 3088.306007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.056 4.056 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.105 4.105 6 C -0.079 4.079 7 C -0.058 4.058 8 C 0.071 3.929 9 H 0.061 0.939 10 C -0.516 4.516 11 H 0.075 0.925 12 C 0.065 3.935 13 N -0.888 5.888 14 Si 0.894 3.106 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.026 4.026 19 S -0.238 6.238 20 H 0.070 0.930 21 H 0.040 0.960 22 H 0.093 0.907 23 H 0.115 0.885 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.265 0.735 27 H 0.108 0.892 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 7.072 0.062 7.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.058 4.058 3 C -0.154 4.154 4 C -0.144 4.144 5 C -0.129 4.129 6 C -0.192 4.192 7 C -0.063 4.063 8 C 0.052 3.948 9 H 0.079 0.921 10 C -0.555 4.555 11 H 0.093 0.907 12 C -0.138 4.138 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.174 4.174 19 S 0.004 5.996 20 H 0.089 0.911 21 H 0.059 0.941 22 H 0.111 0.889 23 H 0.133 0.867 24 H 0.136 0.864 25 H 0.132 0.868 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.168 6.212 0.335 7.489 hybrid contribution -1.850 0.395 -0.777 2.045 sum 2.319 6.607 -0.441 7.016 Atomic orbital electron populations 1.21083 0.91066 0.99905 1.04775 1.19698 0.96484 0.91258 0.98376 1.20781 0.94185 0.96934 1.03493 1.20812 0.94171 0.96799 1.02595 1.20231 0.98852 0.90389 1.03461 1.22049 0.96163 0.95689 1.05255 1.21441 0.91568 0.96923 0.96380 1.18231 0.93471 0.84003 0.99085 0.92103 1.21191 1.07935 1.00484 1.25859 0.90737 1.25000 0.97871 0.95458 0.95465 1.69909 1.38881 1.03987 1.39775 0.86601 0.82720 0.77464 0.81052 1.20066 1.21160 1.19925 1.24709 0.86878 1.01979 1.03823 1.85543 1.25126 1.00917 1.87992 0.91138 0.94133 0.88888 0.86721 0.86354 0.86797 0.92481 0.87419 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 8.50 36.01 0.31 -1.78 15 2 C -0.06 -1.12 5.77 -104.31 -0.60 -1.72 15 3 C -0.13 -2.28 9.60 -39.75 -0.38 -2.66 15 4 C -0.12 -2.01 10.08 -39.63 -0.40 -2.41 15 5 C -0.11 -1.91 10.05 -39.44 -0.40 -2.31 15 6 C -0.08 -1.68 6.48 -39.13 -0.25 -1.93 15 7 C -0.06 -1.29 5.53 -103.80 -0.57 -1.87 15 8 C 0.07 1.73 2.31 -92.25 -0.21 1.51 15 9 H 0.06 1.62 8.14 -51.93 -0.42 1.19 15 10 C -0.52 -12.93 6.77 -34.44 -0.23 -13.16 15 11 H 0.07 1.83 4.82 -52.48 -0.25 1.58 15 12 C 0.07 1.67 5.33 -17.82 -0.09 1.57 15 13 N -0.89 -23.67 12.41 55.43 0.69 -22.98 15 14 Si 0.89 19.91 29.54 -169.99 -5.02 14.88 15 15 H -0.28 -6.13 7.11 56.52 0.40 -5.72 15 16 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 18 C -0.03 -0.61 6.26 37.75 0.24 -0.37 15 19 S -0.24 -5.05 23.08 -107.50 -2.48 -7.53 15 20 H 0.07 1.37 8.13 -51.93 -0.42 0.95 15 21 H 0.04 0.62 7.83 -51.93 -0.41 0.22 15 22 H 0.09 1.85 5.21 -51.93 -0.27 1.58 15 23 H 0.11 1.63 7.90 -52.49 -0.41 1.21 15 24 H 0.12 1.51 8.06 -52.49 -0.42 1.08 15 25 H 0.11 1.82 8.06 -52.49 -0.42 1.39 15 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 27 H 0.11 2.57 7.82 -51.93 -0.41 2.16 15 28 H 0.08 1.98 7.92 -51.93 -0.41 1.56 15 LS Contribution 245.22 15.07 3.70 3.70 Total: -1.00 -26.24 245.22 -8.71 -34.96 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -2.99 Total: 2.10 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -2.61 Total: -25.13 kcal Atomic # 7 Polarization: -23.67 SS G_CDS: 0.69 Total: -22.98 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: -5.05 SS G_CDS: -2.48 Total: -7.53 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -26.24 -8.71 -34.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032318.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.901 kcal (2) G-P(sol) polarization free energy of solvation -26.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds