Wall clock time and date at job start Mon Mar 30 2020 20:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99959 * 2 1 4 4 H 1.48507 * 109.46737 * 269.99964 * 3 2 1 5 5 H 1.48493 * 109.47458 * 29.99585 * 3 2 1 6 6 H 1.48498 * 109.47292 * 150.00368 * 3 2 1 7 7 C 1.37875 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99849 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00186 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46870 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.86540 * 51.26866 * 10 9 7 12 12 C 1.54706 * 110.94500 * 287.52682 * 10 9 7 13 13 O 1.43763 * 102.77521 * 216.56322 * 12 10 9 14 14 C 1.36137 * 109.25710 * 27.66968 * 13 12 10 15 15 C 1.39339 * 129.85190 * 161.41382 * 14 13 12 16 16 C 1.37954 * 120.36088 * 179.35524 * 15 14 13 17 17 C 1.38202 * 120.41310 * 359.75580 * 16 15 14 18 18 C 1.38861 * 119.69392 * 0.71333 * 17 16 15 19 19 O 1.35896 * 120.06435 * 179.66084 * 18 17 16 20 20 C 1.38222 * 119.86893 * 359.38313 * 18 17 16 21 21 H 0.96999 * 119.99982 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46856 * 60.00541 * 9 7 2 23 23 H 1.08997 * 109.47338 * 300.00422 * 9 7 2 24 24 H 1.09010 * 110.75218 * 334.88536 * 12 10 9 25 25 H 1.09005 * 110.75403 * 98.05486 * 12 10 9 26 26 H 1.08003 * 119.81835 * 359.33734 * 15 14 13 27 27 H 1.08007 * 119.79428 * 180.02562 * 16 15 14 28 28 H 1.07995 * 120.15419 * 180.44630 * 17 16 15 29 29 H 0.96700 * 114.00170 * 269.72411 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 1 3.5498 -3.2151 -0.7941 12 6 3.7961 -3.3027 1.3781 13 8 4.9655 -4.1253 1.5286 14 6 5.9949 -3.5747 0.8284 15 6 7.3669 -3.7917 0.9388 16 6 8.2468 -3.1283 0.1089 17 6 7.7780 -2.2448 -0.8449 18 6 6.4134 -2.0138 -0.9569 19 8 5.9447 -1.1414 -1.8875 20 6 5.5322 -2.6773 -0.1239 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6797 0.8895 23 1 3.8746 -0.6807 -0.8904 24 1 3.7480 -2.5518 2.1668 25 1 2.8913 -3.9105 1.3699 26 1 7.7435 -4.4828 1.6784 27 1 9.3085 -3.3037 0.2022 28 1 8.4701 -1.7332 -1.4972 29 1 5.8685 -0.2312 -1.5702 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260134245.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:03 Heat of formation + Delta-G solvation = -54.712086 kcal Electronic energy + Delta-G solvation = -14717.015205 eV Core-core repulsion = 12184.600757 eV Total energy + Delta-G solvation = -2532.414449 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.87824 -38.10724 -35.92457 -34.01381 -32.01845 -29.52928 -29.17275 -27.02142 -23.44141 -22.32410 -21.85336 -20.02030 -17.95707 -17.05270 -16.40356 -16.10606 -15.60624 -15.11311 -14.36721 -14.15996 -13.58274 -13.23750 -12.80429 -12.57464 -12.10765 -12.03721 -11.63894 -11.29032 -10.92494 -10.60693 -10.41879 -10.12642 -10.07533 -9.76693 -9.24989 -8.61909 -8.37573 -7.87271 -6.12584 -4.11769 1.43347 1.52344 3.23804 3.31592 3.32364 3.60913 3.84472 4.36730 4.45548 4.94618 5.06826 5.17797 5.24182 5.48123 5.56828 5.62735 5.69308 5.98294 6.26145 6.40160 6.45980 6.48539 6.51212 6.67451 6.75988 7.08564 7.22545 7.41999 7.67038 7.92920 8.42221 8.90289 9.48856 11.00566 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.035290 B = 0.009528 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.225463 B = 2938.112638 C = 3486.220494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.056 4.056 11 H 0.092 0.908 12 C 0.062 3.938 13 O -0.313 6.313 14 C 0.121 3.879 15 C -0.157 4.157 16 C -0.080 4.080 17 C -0.182 4.182 18 C 0.156 3.844 19 O -0.493 6.493 20 C -0.185 4.185 21 H 0.264 0.736 22 H 0.017 0.983 23 H 0.025 0.975 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.369 -3.369 1.119 14.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.039 4.039 10 C -0.074 4.074 11 H 0.110 0.890 12 C -0.012 4.012 13 O -0.227 6.227 14 C 0.075 3.925 15 C -0.175 4.175 16 C -0.098 4.098 17 C -0.201 4.201 18 C 0.111 3.889 19 O -0.304 6.304 20 C -0.187 4.187 21 H 0.074 0.926 22 H 0.035 0.965 23 H 0.043 0.957 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 14.151 -3.939 0.904 14.716 hybrid contribution 0.159 1.484 0.148 1.500 sum 14.310 -2.454 1.052 14.557 Atomic orbital electron populations 1.69899 1.06287 1.27012 1.50607 1.24997 0.94712 0.99116 0.94392 0.86811 0.80346 0.83740 0.78606 1.20050 1.21306 1.19138 1.21068 0.88988 0.94633 1.51467 0.90845 1.19571 0.97408 0.89964 0.96924 1.21347 0.88221 1.01084 0.96795 0.88999 1.23991 0.85990 0.93495 0.97736 1.86772 1.19405 1.47740 1.68775 1.19503 0.89519 0.92452 0.90989 1.20198 0.88947 1.04856 1.03538 1.20601 0.99062 0.95697 0.94468 1.21243 0.94192 1.03216 1.01455 1.17690 0.89998 0.92697 0.88534 1.84780 1.86998 1.21584 1.37051 1.21519 0.97685 1.01766 0.97687 0.92607 0.96472 0.95651 0.90104 0.87511 0.85685 0.85220 0.85367 0.75218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.96 55.43 0.77 -26.26 15 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 15 3 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 15 7 C -0.52 -14.29 9.40 -34.44 -0.32 -14.61 15 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 15 9 C 0.00 -0.03 3.45 -27.88 -0.10 -0.13 15 10 C -0.06 -1.15 3.04 -90.41 -0.27 -1.42 15 11 H 0.09 1.95 8.14 -51.93 -0.42 1.53 15 12 C 0.06 1.16 7.29 38.06 0.28 1.43 15 13 O -0.31 -5.74 11.10 -20.18 -0.22 -5.97 15 14 C 0.12 2.14 7.04 -38.97 -0.27 1.86 15 15 C -0.16 -2.26 10.06 -39.28 -0.40 -2.65 15 16 C -0.08 -1.02 10.01 -39.70 -0.40 -1.41 15 17 C -0.18 -2.55 10.01 -39.36 -0.39 -2.95 15 18 C 0.16 2.64 6.65 -39.36 -0.26 2.38 15 19 O -0.49 -8.28 12.19 -19.41 -0.24 -8.52 15 20 C -0.19 -3.46 5.65 -103.96 -0.59 -4.05 15 21 H 0.26 7.44 8.31 -40.82 -0.34 7.11 15 22 H 0.02 0.40 7.00 -51.93 -0.36 0.03 15 23 H 0.03 0.57 5.75 -51.93 -0.30 0.28 15 24 H 0.08 1.51 7.78 -51.92 -0.40 1.10 15 25 H 0.11 1.87 8.14 -51.93 -0.42 1.45 15 26 H 0.13 1.51 8.06 -52.48 -0.42 1.09 15 27 H 0.13 1.19 8.06 -52.48 -0.42 0.77 15 28 H 0.13 1.49 8.06 -52.49 -0.42 1.06 15 29 H 0.39 5.24 8.59 45.56 0.39 5.63 15 LS Contribution 249.41 15.07 3.76 3.76 Total: -1.00 -31.00 249.41 -5.80 -36.80 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -2.37 Total: 3.65 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -2.82 Total: -19.68 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.77 Total: -26.26 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.46 Total: -14.48 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.00 -5.80 -36.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260134245.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.915 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds