Wall clock time and date at job start Mon Mar 30 2020 20:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99959 * 2 1 4 4 H 1.48507 * 109.46737 * 269.99964 * 3 2 1 5 5 H 1.48493 * 109.47458 * 29.99585 * 3 2 1 6 6 H 1.48498 * 109.47292 * 150.00368 * 3 2 1 7 7 C 1.37875 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99849 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00186 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46870 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.86540 * 51.26866 * 10 9 7 12 12 C 1.54706 * 110.94500 * 287.52682 * 10 9 7 13 13 O 1.43763 * 102.77521 * 216.56322 * 12 10 9 14 14 C 1.36137 * 109.25710 * 27.66968 * 13 12 10 15 15 C 1.39339 * 129.85190 * 161.41382 * 14 13 12 16 16 C 1.37954 * 120.36088 * 179.35524 * 15 14 13 17 17 C 1.38202 * 120.41310 * 359.75580 * 16 15 14 18 18 C 1.38861 * 119.69392 * 0.71333 * 17 16 15 19 19 O 1.35896 * 120.06435 * 179.66084 * 18 17 16 20 20 C 1.38222 * 119.86893 * 359.38313 * 18 17 16 21 21 H 0.96999 * 119.99982 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46856 * 60.00541 * 9 7 2 23 23 H 1.08997 * 109.47338 * 300.00422 * 9 7 2 24 24 H 1.09010 * 110.75218 * 334.88536 * 12 10 9 25 25 H 1.09005 * 110.75403 * 98.05486 * 12 10 9 26 26 H 1.08003 * 119.81835 * 359.33734 * 15 14 13 27 27 H 1.08007 * 119.79428 * 180.02562 * 16 15 14 28 28 H 1.07995 * 120.15419 * 180.44630 * 17 16 15 29 29 H 0.96700 * 114.00170 * 269.72411 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 1 3.5498 -3.2151 -0.7941 12 6 3.7961 -3.3027 1.3781 13 8 4.9655 -4.1253 1.5286 14 6 5.9949 -3.5747 0.8284 15 6 7.3669 -3.7917 0.9388 16 6 8.2468 -3.1283 0.1089 17 6 7.7780 -2.2448 -0.8449 18 6 6.4134 -2.0138 -0.9569 19 8 5.9447 -1.1414 -1.8875 20 6 5.5322 -2.6773 -0.1239 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6797 0.8895 23 1 3.8746 -0.6807 -0.8904 24 1 3.7480 -2.5518 2.1668 25 1 2.8913 -3.9105 1.3699 26 1 7.7435 -4.4828 1.6784 27 1 9.3085 -3.3037 0.2022 28 1 8.4701 -1.7332 -1.4972 29 1 5.8685 -0.2312 -1.5702 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260134245.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:02 Heat of formation + Delta-G solvation = -76.624003 kcal Electronic energy + Delta-G solvation = -14717.965377 eV Core-core repulsion = 12184.600757 eV Total energy + Delta-G solvation = -2533.364621 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20476 -39.36655 -37.13917 -35.81494 -33.93951 -30.86671 -30.48703 -28.69987 -25.13265 -23.72106 -23.13084 -21.58620 -19.27393 -19.04056 -17.77238 -17.46176 -16.93811 -16.45071 -16.04721 -15.62111 -14.96393 -14.76410 -14.65629 -14.11828 -13.55505 -13.31560 -13.15394 -12.91974 -12.49651 -12.09643 -11.89510 -11.72172 -11.68762 -11.60590 -11.18809 -10.76459 -9.59689 -9.13708 -8.30021 -6.34926 0.26024 0.33853 1.35564 1.37559 1.48148 2.31950 2.35374 2.65677 3.04792 3.27025 3.60300 3.70721 4.07801 4.12567 4.24475 4.47090 4.53891 4.61966 4.72531 4.85098 4.97310 5.16958 5.35185 5.36794 5.42368 5.48482 5.59149 5.63218 6.14237 6.24110 6.71137 6.79511 7.29491 8.86370 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.035290 B = 0.009528 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.225463 B = 2938.112638 C = 3486.220494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.530 4.530 8 H 0.035 0.965 9 C 0.010 3.990 10 C -0.058 4.058 11 H 0.068 0.932 12 C 0.067 3.933 13 O -0.319 6.319 14 C 0.095 3.905 15 C -0.152 4.152 16 C -0.062 4.062 17 C -0.174 4.174 18 C 0.139 3.861 19 O -0.508 6.508 20 C -0.216 4.216 21 H 0.266 0.734 22 H 0.021 0.979 23 H 0.032 0.968 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.151 0.849 27 H 0.178 0.822 28 H 0.158 0.842 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.078 -2.664 1.228 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.568 4.568 8 H 0.053 0.947 9 C -0.028 4.028 10 C -0.076 4.076 11 H 0.087 0.913 12 C -0.008 4.008 13 O -0.234 6.234 14 C 0.049 3.951 15 C -0.171 4.171 16 C -0.080 4.080 17 C -0.192 4.192 18 C 0.094 3.906 19 O -0.320 6.320 20 C -0.217 4.217 21 H 0.075 0.925 22 H 0.039 0.961 23 H 0.050 0.950 24 H 0.097 0.903 25 H 0.125 0.875 26 H 0.169 0.831 27 H 0.195 0.805 28 H 0.176 0.824 29 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 17.882 -3.246 1.012 18.203 hybrid contribution -0.946 1.174 0.084 1.510 sum 16.937 -2.071 1.096 17.098 Atomic orbital electron populations 1.70059 1.08336 1.28199 1.52370 1.25977 0.95568 1.03473 0.93977 0.85691 0.79634 0.78220 0.79348 1.18853 1.21215 1.16738 1.21366 0.91422 0.93302 1.50734 0.94678 1.19410 0.94231 0.92030 0.97083 1.21144 0.90325 0.99146 0.97012 0.91329 1.23843 0.86629 0.93539 0.96767 1.86736 1.19531 1.47864 1.69262 1.19898 0.90582 0.93337 0.91249 1.20661 0.87492 1.04858 1.04053 1.21169 1.01055 0.93402 0.92362 1.21618 0.93041 1.02902 1.01644 1.18026 0.91157 0.92934 0.88474 1.84744 1.87302 1.22535 1.37452 1.21455 0.96222 1.04139 0.99915 0.92476 0.96093 0.95001 0.90326 0.87499 0.83099 0.80507 0.82430 0.73849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.90 13.96 21.45 0.30 -58.60 15 2 C 0.01 0.41 5.47 84.66 0.46 0.87 15 3 Si 0.95 42.90 27.47 68.60 1.88 44.79 15 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 15 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 15 6 H -0.24 -10.06 6.54 99.48 0.65 -9.41 15 7 C -0.53 -29.98 9.40 25.60 0.24 -29.74 15 8 H 0.03 2.18 7.99 -2.91 -0.02 2.16 15 9 C 0.01 0.45 3.45 29.85 0.10 0.55 15 10 C -0.06 -2.43 3.04 -10.66 -0.03 -2.46 15 11 H 0.07 3.10 8.14 -2.39 -0.02 3.08 15 12 C 0.07 2.57 7.29 72.56 0.53 3.10 15 13 O -0.32 -11.72 11.10 -95.11 -1.06 -12.77 15 14 C 0.09 3.20 7.04 22.67 0.16 3.36 15 15 C -0.15 -3.82 10.06 22.47 0.23 -3.60 15 16 C -0.06 -1.25 10.01 22.19 0.22 -1.03 15 17 C -0.17 -4.11 10.01 22.41 0.22 -3.89 15 18 C 0.14 4.42 6.65 22.42 0.15 4.57 15 19 O -0.51 -16.20 12.19 -92.38 -1.13 -17.32 15 20 C -0.22 -7.92 5.65 -19.44 -0.11 -8.03 15 21 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 22 H 0.02 0.95 7.00 -2.39 -0.02 0.93 15 23 H 0.03 1.43 5.75 -2.39 -0.01 1.41 15 24 H 0.08 3.01 7.78 -2.38 -0.02 2.99 15 25 H 0.11 3.99 8.14 -2.38 -0.02 3.97 15 26 H 0.15 2.97 8.06 -2.91 -0.02 2.95 15 27 H 0.18 1.95 8.06 -2.91 -0.02 1.93 15 28 H 0.16 2.80 8.06 -2.91 -0.02 2.78 15 29 H 0.40 10.02 8.59 -74.06 -0.64 9.39 15 Total: -1.00 -68.87 249.41 2.65 -66.21 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.48 Total: 13.99 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 2.17 Total: -36.29 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.30 Total: -58.60 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -2.18 Total: -30.10 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.79 kcal Total: -68.87 2.65 -66.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260134245.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.410 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds