Wall clock time and date at job start Mon Mar 30 2020 20:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00028 * 2 1 4 4 H 1.48500 * 109.47269 * 270.00081 * 3 2 1 5 5 H 1.48504 * 109.46902 * 29.99780 * 3 2 1 6 6 H 1.48501 * 109.47191 * 149.99995 * 3 2 1 7 7 C 1.37874 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47069 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.47071 * 180.02562 * 10 9 7 12 12 C 1.37932 * 120.03053 * 264.98075 * 11 10 9 13 13 C 1.38289 * 120.23420 * 179.72630 * 12 11 10 14 14 C 1.38892 * 120.29576 * 0.27576 * 13 12 11 15 15 O 1.35910 * 119.97348 * 180.02562 * 14 13 12 16 16 C 1.38392 * 120.05723 * 359.97438 * 14 13 12 17 17 C 1.39797 * 119.76399 * 0.02562 * 16 14 13 18 18 C 1.47187 * 120.14552 * 179.97438 * 17 16 14 19 19 O 1.21244 * 119.99516 * 354.81099 * 18 17 16 20 20 H 0.97003 * 120.00340 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47259 * 60.00449 * 9 7 2 22 22 H 1.09002 * 109.47592 * 299.99605 * 9 7 2 23 23 H 1.08994 * 109.47028 * 60.00693 * 10 9 7 24 24 H 1.08995 * 109.46964 * 300.00023 * 10 9 7 25 25 H 1.07999 * 119.88536 * 0.02562 * 12 11 10 26 26 H 1.08003 * 119.85267 * 180.30211 * 13 12 11 27 27 H 0.96691 * 114.00345 * 89.99387 * 15 14 13 28 28 H 1.07996 * 120.11698 * 179.97438 * 16 14 13 29 29 H 1.07995 * 119.99926 * 174.80430 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 -0.0001 12 6 1.2367 -5.6176 1.1892 13 6 0.5407 -6.8126 1.1940 14 6 0.0980 -7.3704 0.0016 15 8 -0.5859 -8.5448 0.0140 16 6 0.3517 -6.7308 -1.1992 17 6 1.0550 -5.5226 -1.2069 18 6 1.3300 -4.8355 -2.4792 19 8 1.0300 -5.3618 -3.5294 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8718 -3.6043 0.8905 24 1 2.8719 -3.6043 -0.8894 25 1 1.5775 -5.1897 2.1204 26 1 0.3401 -7.3141 2.1293 27 1 -1.5441 -8.4412 0.0925 28 1 0.0082 -7.1638 -2.1270 29 1 1.7988 -3.8626 -2.4771 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260168373.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:25 Heat of formation + Delta-G solvation = -69.910534 kcal Electronic energy + Delta-G solvation = -14067.363827 eV Core-core repulsion = 11534.290324 eV Total energy + Delta-G solvation = -2533.073503 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.96645 -38.30981 -36.80311 -33.86836 -31.90414 -31.05825 -28.57143 -25.23096 -24.55861 -22.15926 -20.98662 -20.17300 -18.25637 -16.54846 -16.38628 -15.71762 -15.14308 -14.60784 -14.52614 -14.17105 -13.89640 -13.50312 -12.94831 -12.67971 -11.97963 -11.92932 -11.71614 -10.99828 -10.97845 -10.68140 -10.59755 -10.06122 -9.75596 -9.42947 -9.19130 -8.86799 -8.44510 -8.19443 -6.09087 -4.13276 0.82918 1.44090 2.66094 3.27295 3.34320 3.36636 3.83163 4.24818 4.38901 4.65981 5.02112 5.11203 5.26388 5.27221 5.47348 5.69208 5.94144 6.00526 6.11155 6.38017 6.45673 6.46926 6.70936 6.74516 6.94854 7.53414 7.61511 7.66066 7.71416 7.88570 8.27377 8.93393 9.52076 11.01695 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.038723 B = 0.006652 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.909452 B = 4207.988589 C = 4575.787236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.092 4.092 11 C -0.011 4.011 12 C -0.121 4.121 13 C -0.109 4.109 14 C 0.067 3.933 15 O -0.500 6.500 16 C -0.084 4.084 17 C -0.180 4.180 18 C 0.386 3.614 19 O -0.473 6.473 20 H 0.262 0.738 21 H 0.019 0.981 22 H 0.021 0.979 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.133 0.867 26 H 0.128 0.872 27 H 0.386 0.614 28 H 0.133 0.867 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 -11.062 1.795 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.129 4.129 11 C -0.011 4.011 12 C -0.139 4.139 13 C -0.128 4.128 14 C 0.023 3.977 15 O -0.310 6.310 16 C -0.103 4.103 17 C -0.181 4.181 18 C 0.246 3.754 19 O -0.348 6.348 20 H 0.072 0.928 21 H 0.037 0.963 22 H 0.039 0.961 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.151 0.849 26 H 0.146 0.854 27 H 0.241 0.759 28 H 0.151 0.849 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.791 -11.472 1.180 11.559 hybrid contribution -0.193 1.129 0.293 1.182 sum 0.598 -10.343 1.473 10.464 Atomic orbital electron populations 1.69958 1.06098 1.26838 1.50233 1.25015 0.94834 0.99331 0.95077 0.86583 0.79830 0.83340 0.78198 1.20574 1.21217 1.19808 1.21207 0.93128 0.90722 1.51406 0.92362 1.19128 0.93530 0.90303 0.97847 1.21037 0.98736 0.90792 1.02312 1.20692 0.93483 0.95413 0.91533 1.20988 0.99875 0.94701 0.98361 1.21606 0.98148 0.95407 0.97598 1.18261 0.99818 0.87364 0.92289 1.84837 1.23098 1.26961 1.96058 1.21610 0.97103 0.93421 0.98155 1.20668 1.04203 0.97001 0.96229 1.24358 0.74325 0.90552 0.86143 1.90448 1.42059 1.67634 1.34632 0.92840 0.96311 0.96102 0.91176 0.91475 0.84891 0.85416 0.75935 0.84893 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.53 -13.88 9.11 -34.44 -0.31 -14.19 15 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 15 9 C 0.03 0.68 4.93 -27.88 -0.14 0.55 15 10 C -0.09 -1.68 4.64 -27.88 -0.13 -1.81 15 11 C -0.01 -0.18 5.17 -104.13 -0.54 -0.72 15 12 C -0.12 -1.79 9.66 -39.67 -0.38 -2.17 15 13 C -0.11 -1.47 9.98 -39.32 -0.39 -1.86 15 14 C 0.07 0.95 6.70 -39.28 -0.26 0.68 15 15 O -0.50 -6.13 13.50 -19.46 -0.26 -6.39 15 16 C -0.08 -1.31 9.54 -38.94 -0.37 -1.69 15 17 C -0.18 -3.01 5.87 -105.08 -0.62 -3.62 15 18 C 0.39 6.63 10.68 34.36 0.37 6.99 15 19 O -0.47 -9.05 17.18 5.59 0.10 -8.95 15 20 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 21 H 0.02 0.47 7.87 -51.93 -0.41 0.06 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.10 15 23 H 0.07 1.22 8.05 -51.93 -0.42 0.80 15 24 H 0.07 1.15 6.66 -51.93 -0.35 0.81 15 25 H 0.13 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.13 1.40 8.06 -52.48 -0.42 0.98 15 27 H 0.39 2.88 9.06 45.56 0.41 3.29 15 28 H 0.13 2.02 7.66 -52.49 -0.40 1.62 15 29 H 0.12 1.91 6.40 -52.49 -0.34 1.58 15 LS Contribution 262.56 15.07 3.96 3.96 Total: -1.00 -30.96 262.56 -5.68 -36.64 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -2.31 Total: 0.37 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -2.88 Total: -16.32 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.74 Total: -25.06 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.17 Total: -15.34 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.96 -5.68 -36.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260168373.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.274 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds