Wall clock time and date at job start Mon Mar 30 2020 20:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00028 * 2 1 4 4 H 1.48500 * 109.47269 * 270.00081 * 3 2 1 5 5 H 1.48504 * 109.46902 * 29.99780 * 3 2 1 6 6 H 1.48501 * 109.47191 * 149.99995 * 3 2 1 7 7 C 1.37874 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47069 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.47071 * 180.02562 * 10 9 7 12 12 C 1.37932 * 120.03053 * 264.98075 * 11 10 9 13 13 C 1.38289 * 120.23420 * 179.72630 * 12 11 10 14 14 C 1.38892 * 120.29576 * 0.27576 * 13 12 11 15 15 O 1.35910 * 119.97348 * 180.02562 * 14 13 12 16 16 C 1.38392 * 120.05723 * 359.97438 * 14 13 12 17 17 C 1.39797 * 119.76399 * 0.02562 * 16 14 13 18 18 C 1.47187 * 120.14552 * 179.97438 * 17 16 14 19 19 O 1.21244 * 119.99516 * 354.81099 * 18 17 16 20 20 H 0.97003 * 120.00340 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47259 * 60.00449 * 9 7 2 22 22 H 1.09002 * 109.47592 * 299.99605 * 9 7 2 23 23 H 1.08994 * 109.47028 * 60.00693 * 10 9 7 24 24 H 1.08995 * 109.46964 * 300.00023 * 10 9 7 25 25 H 1.07999 * 119.88536 * 0.02562 * 12 11 10 26 26 H 1.08003 * 119.85267 * 180.30211 * 13 12 11 27 27 H 0.96691 * 114.00345 * 89.99387 * 15 14 13 28 28 H 1.07996 * 120.11698 * 179.97438 * 16 14 13 29 29 H 1.07995 * 119.99926 * 174.80430 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 -0.0001 12 6 1.2367 -5.6176 1.1892 13 6 0.5407 -6.8126 1.1940 14 6 0.0980 -7.3704 0.0016 15 8 -0.5859 -8.5448 0.0140 16 6 0.3517 -6.7308 -1.1992 17 6 1.0550 -5.5226 -1.2069 18 6 1.3300 -4.8355 -2.4792 19 8 1.0300 -5.3618 -3.5294 20 1 -0.4851 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8718 -3.6043 0.8905 24 1 2.8719 -3.6043 -0.8894 25 1 1.5775 -5.1897 2.1204 26 1 0.3401 -7.3141 2.1293 27 1 -1.5441 -8.4412 0.0925 28 1 0.0082 -7.1638 -2.1270 29 1 1.7988 -3.8626 -2.4771 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260168373.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:25 Heat of formation + Delta-G solvation = -90.225770 kcal Electronic energy + Delta-G solvation = -14068.244762 eV Core-core repulsion = 11534.290324 eV Total energy + Delta-G solvation = -2533.954438 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.19392 -39.59353 -37.99067 -35.62594 -33.59479 -32.26621 -30.13825 -26.86727 -25.91660 -23.70691 -22.35640 -21.52561 -19.37073 -18.52238 -17.66391 -16.92138 -16.51948 -16.35859 -15.81278 -15.44750 -15.26790 -14.79115 -14.51182 -14.38210 -13.53923 -13.35102 -13.14416 -12.78087 -12.47178 -12.33819 -11.76862 -11.73042 -11.56120 -11.19297 -10.72698 -10.52046 -10.04615 -9.44369 -8.16446 -6.27108 -0.41561 0.26803 1.38597 1.44739 1.45294 1.55741 2.43872 2.66025 3.12794 3.18096 3.45041 3.84035 3.96397 4.01592 4.27243 4.46110 4.68365 4.76605 4.85845 4.93258 5.12665 5.22499 5.32140 5.41247 5.55463 5.76608 5.77524 5.87996 6.25512 6.33793 6.81802 6.90497 7.42741 8.94718 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.038723 B = 0.006652 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.909452 B = 4207.988589 C = 4575.787236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.035 3.965 10 C -0.078 4.078 11 C -0.027 4.027 12 C -0.121 4.121 13 C -0.100 4.100 14 C 0.078 3.922 15 O -0.503 6.503 16 C -0.097 4.097 17 C -0.192 4.192 18 C 0.390 3.610 19 O -0.498 6.498 20 H 0.262 0.738 21 H -0.005 1.005 22 H -0.004 1.004 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.150 0.850 26 H 0.160 0.840 27 H 0.409 0.591 28 H 0.132 0.868 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -11.801 2.879 12.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.002 4.002 10 C -0.116 4.116 11 C -0.028 4.028 12 C -0.139 4.139 13 C -0.119 4.119 14 C 0.033 3.967 15 O -0.316 6.316 16 C -0.116 4.116 17 C -0.194 4.194 18 C 0.252 3.748 19 O -0.375 6.375 20 H 0.071 0.929 21 H 0.013 0.987 22 H 0.014 0.986 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.168 0.832 26 H 0.178 0.822 27 H 0.268 0.732 28 H 0.150 0.850 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.502 -12.221 2.273 12.521 hybrid contribution -0.480 1.245 -0.007 1.334 sum 1.022 -10.977 2.267 11.255 Atomic orbital electron populations 1.70091 1.07787 1.27654 1.51802 1.25903 0.95608 1.03144 0.94914 0.85529 0.78831 0.78867 0.78321 1.20114 1.21282 1.18476 1.21709 0.93839 0.91926 1.50216 0.91446 1.18966 0.93942 0.91896 0.95441 1.20779 0.97687 0.89767 1.03320 1.20544 0.94660 0.95179 0.92399 1.21235 0.99426 0.95056 0.98209 1.21907 0.96638 0.94691 0.98637 1.18319 0.99168 0.87264 0.91926 1.84779 1.25034 1.25870 1.95947 1.21707 0.97482 0.93411 0.99016 1.20631 1.05177 0.97722 0.95833 1.24493 0.73552 0.90549 0.86229 1.90431 1.43372 1.68215 1.35444 0.92919 0.98655 0.98592 0.90037 0.90611 0.83204 0.82208 0.73179 0.85047 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.53 15 2 C 0.00 0.12 5.46 84.65 0.46 0.58 15 3 Si 0.96 42.45 29.54 68.60 2.03 44.48 15 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 15 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 7 C -0.54 -28.38 9.11 25.60 0.23 -28.15 15 8 H 0.07 3.34 7.74 -2.91 -0.02 3.32 15 9 C 0.03 1.66 4.93 29.85 0.15 1.81 15 10 C -0.08 -2.83 4.64 29.85 0.14 -2.69 15 11 C -0.03 -0.89 5.17 -19.55 -0.10 -0.99 15 12 C -0.12 -3.31 9.66 22.21 0.21 -3.10 15 13 C -0.10 -2.39 9.98 22.44 0.22 -2.17 15 14 C 0.08 2.01 6.70 22.46 0.15 2.16 15 15 O -0.50 -10.79 13.50 -92.53 -1.25 -12.03 15 16 C -0.10 -2.95 9.54 22.68 0.22 -2.73 15 17 C -0.19 -6.37 5.87 -20.16 -0.12 -6.49 15 18 C 0.39 13.58 10.68 70.17 0.75 14.33 15 19 O -0.50 -19.37 17.18 -2.92 -0.05 -19.42 15 20 H 0.26 14.59 8.31 -92.71 -0.77 13.82 15 21 H 0.00 -0.26 7.87 -2.39 -0.02 -0.28 15 22 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 15 23 H 0.08 2.72 8.05 -2.39 -0.02 2.70 15 24 H 0.08 2.56 6.66 -2.39 -0.02 2.54 15 25 H 0.15 3.54 8.06 -2.91 -0.02 3.51 15 26 H 0.16 2.79 8.06 -2.91 -0.02 2.76 15 27 H 0.41 4.77 9.06 -74.06 -0.67 4.10 15 28 H 0.13 3.95 7.66 -2.91 -0.02 3.92 15 29 H 0.12 4.04 6.40 -2.91 -0.02 4.02 15 Total: -1.00 -65.91 262.56 3.82 -62.09 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 0.50 Total: 6.85 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 2.32 Total: -27.43 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.28 Total: -54.53 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.30 Total: -31.46 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -65.91 3.82 -62.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260168373.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.136 kcal (2) G-P(sol) polarization free energy of solvation -65.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds