Wall clock time and date at job start Mon Mar 30 2020 20:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36946 * 119.99865 * 2 1 4 4 H 1.07996 * 119.99832 * 157.71561 * 3 2 1 5 5 C 1.38859 * 120.00149 * 337.43592 * 3 2 1 6 6 N 1.31518 * 119.99890 * 349.17734 * 5 3 2 7 7 Si 1.86802 * 119.99997 * 169.17767 * 5 3 2 8 8 H 1.48503 * 109.46684 * 90.00046 * 7 5 3 9 9 H 1.48496 * 109.47068 * 210.00085 * 7 5 3 10 10 H 1.48501 * 109.46887 * 330.00375 * 7 5 3 11 11 C 1.38233 * 119.99723 * 180.02562 * 2 1 3 12 12 N 1.32889 * 118.70961 * 179.73681 * 11 2 1 13 13 C 1.32305 * 120.98657 * 179.69503 * 12 11 2 14 14 C 1.38891 * 118.36824 * 0.57154 * 13 12 11 15 15 C 1.46290 * 137.70855 * 179.72753 * 14 13 12 16 16 N 1.30141 * 105.26843 * 179.97438 * 15 14 13 17 17 O 1.20975 * 113.50427 * 359.97438 * 16 15 14 18 18 C 1.34102 * 112.99180 * 359.97438 * 17 16 15 19 19 N 1.32271 * 136.38916 * 179.97438 * 18 17 16 20 20 H 1.09001 * 109.47693 * 86.61832 * 1 2 3 21 21 H 1.09005 * 109.47433 * 206.62398 * 1 2 3 22 22 H 1.09006 * 109.47343 * 326.62070 * 1 2 3 23 23 H 0.97005 * 119.99914 * 180.02562 * 6 5 3 24 24 H 1.08004 * 120.82145 * 180.24700 * 13 12 11 25 25 H 1.08004 * 127.36736 * 359.95529 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1692 1.2209 0.3547 5 6 1.5351 2.3425 -0.4614 6 7 0.3834 2.2684 -1.0921 7 14 2.3442 4.0036 -0.1864 8 1 3.2346 4.3164 -1.3331 9 1 1.2978 5.0510 -0.0721 10 1 3.1436 3.9638 1.0644 11 6 2.1561 -1.1972 -0.0005 12 7 3.4847 -1.1673 -0.0059 13 6 4.1912 -2.2859 -0.0006 14 6 3.5103 -3.4965 -0.0015 15 6 3.8378 -4.9223 -0.0020 16 7 2.6909 -5.5373 -0.0022 17 8 1.7414 -4.7877 -0.0015 18 6 2.0952 -3.4942 0.0000 19 7 1.4679 -2.3297 0.0009 20 1 -0.3634 0.0606 -1.0258 21 1 -0.3634 -0.9187 0.4605 22 1 -0.3634 0.8582 0.5654 23 1 -0.0457 3.0763 -1.4148 24 1 5.2708 -2.2585 -0.0009 25 1 4.8211 -5.3690 -0.0025 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260191498.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:31 Heat of formation + Delta-G solvation = 114.669555 kcal Electronic energy + Delta-G solvation = -14354.873209 eV Core-core repulsion = 11758.556107 eV Total energy + Delta-G solvation = -2596.317102 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.29105 -41.15452 -37.99963 -34.88547 -34.03032 -33.76423 -31.18127 -28.75088 -26.88430 -25.85038 -23.32658 -23.18155 -20.56985 -18.75844 -18.67898 -18.49913 -17.95817 -16.88169 -16.06449 -15.81187 -15.21394 -14.88000 -14.36422 -14.22006 -13.45117 -13.15839 -12.88351 -12.71130 -12.54469 -12.31651 -12.08493 -11.59248 -11.45771 -10.87556 -10.59335 -9.90124 -9.17115 -8.49981 -5.98056 -0.06272 0.38945 1.30391 1.38284 1.47950 1.52205 1.60904 2.19675 2.62647 2.73089 3.18534 3.33123 3.63143 3.85787 3.89124 4.22235 4.58426 4.69345 4.86253 5.16328 5.17540 5.28122 5.40980 5.76690 6.22908 6.35872 6.96582 7.14749 7.35393 7.74591 8.49499 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.061554 B = 0.007783 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.776954 B = 3596.713000 C = 3994.206976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.138 3.862 2 N -0.385 5.385 3 C -0.317 4.317 4 H 0.111 0.889 5 C -0.007 4.007 6 N -0.886 5.886 7 Si 1.011 2.989 8 H -0.270 1.270 9 H -0.273 1.273 10 H -0.259 1.259 11 C 0.497 3.503 12 N -0.579 5.579 13 C 0.279 3.721 14 C -0.406 4.406 15 C 0.112 3.888 16 N -0.379 5.379 17 O 0.022 5.978 18 C 0.280 3.720 19 N -0.614 5.614 20 H 0.049 0.951 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.281 0.719 24 H 0.219 0.781 25 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.225 -4.261 2.010 8.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.074 5.074 3 C -0.446 4.446 4 H 0.129 0.871 5 C -0.211 4.211 6 N -0.521 5.521 7 Si 0.832 3.168 8 H -0.195 1.195 9 H -0.198 1.198 10 H -0.183 1.183 11 C 0.144 3.856 12 N -0.301 5.301 13 C 0.098 3.902 14 C -0.423 4.423 15 C -0.078 4.078 16 N -0.099 5.099 17 O -0.018 6.018 18 C 0.084 3.916 19 N -0.357 5.357 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.235 0.765 25 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 5.695 -4.103 1.907 7.273 hybrid contribution 0.456 0.566 -0.131 0.738 sum 6.150 -3.537 1.776 7.314 Atomic orbital electron populations 1.21397 0.77834 0.99857 1.01438 1.42702 1.06116 1.01234 1.57393 1.20233 1.00384 0.83077 1.40926 0.87131 1.26513 0.96851 1.03926 0.93854 1.70180 1.17277 1.31567 1.33052 0.84658 0.77832 0.74894 0.79377 1.19513 1.19774 1.18257 1.19196 0.85471 0.85003 0.95889 1.68217 1.06126 1.31350 1.24398 1.22989 1.01430 0.83109 0.82639 1.21602 0.95291 0.97584 1.27790 1.26183 0.98915 0.87748 0.94981 1.73507 0.96869 1.16332 1.23170 1.84728 1.31060 1.10161 1.75889 1.21547 0.90734 0.87213 0.92091 1.66279 1.41126 0.94769 1.33561 0.93273 0.92559 0.91571 0.90914 0.76478 0.73012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.73 8.71 127.77 1.11 7.84 15 2 N -0.38 -19.99 3.10 -547.54 -1.70 -21.69 15 3 C -0.32 -16.33 9.28 84.04 0.78 -15.55 15 4 H 0.11 5.63 7.29 -2.91 -0.02 5.61 15 5 C -0.01 -0.34 5.13 84.89 0.44 0.10 15 6 N -0.89 -44.79 10.57 21.65 0.23 -44.56 15 7 Si 1.01 38.09 29.57 68.60 2.03 40.12 15 8 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 9 H -0.27 -9.92 7.11 99.48 0.71 -9.21 15 10 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 11 C 0.50 24.80 8.12 261.38 2.12 26.92 15 12 N -0.58 -25.71 9.17 -197.57 -1.81 -27.52 15 13 C 0.28 9.40 11.37 84.78 0.96 10.37 15 14 C -0.41 -14.16 6.61 -20.22 -0.13 -14.29 15 15 C 0.11 2.99 12.45 87.04 1.08 4.08 15 16 N -0.38 -12.84 11.95 -53.04 -0.63 -13.47 15 17 O 0.02 0.87 11.11 70.98 0.79 1.66 15 18 C 0.28 12.12 8.82 85.43 0.75 12.88 15 19 N -0.61 -30.05 9.02 -311.32 -2.81 -32.86 15 20 H 0.05 2.51 7.47 -2.39 -0.02 2.49 15 21 H 0.06 2.61 7.20 -2.38 -0.02 2.59 15 22 H 0.07 3.20 7.13 -2.38 -0.02 3.18 15 23 H 0.28 13.18 8.31 -92.70 -0.77 12.41 15 24 H 0.22 4.61 8.06 -2.91 -0.02 4.58 15 25 H 0.25 3.44 8.06 -2.91 -0.02 3.42 15 Total: -1.00 -63.34 229.81 4.44 -58.90 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.23 Total: 7.08 kcal Atomic # 6 Polarization: 25.23 SS G_CDS: 7.12 Total: 32.35 kcal Atomic # 7 Polarization: -133.38 SS G_CDS: -6.73 Total: -140.10 kcal Atomic # 8 Polarization: 0.87 SS G_CDS: 0.79 Total: 1.66 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -63.34 4.44 -58.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191498.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.567 kcal (2) G-P(sol) polarization free energy of solvation -63.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds