Wall clock time and date at job start Mon Mar 30 2020 20:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86805 * 119.99750 * 2 1 4 4 H 1.48496 * 109.47183 * 269.99743 * 3 2 1 5 5 H 1.48494 * 109.46981 * 30.00537 * 3 2 1 6 6 H 1.48508 * 109.46954 * 150.00325 * 3 2 1 7 7 C 1.38654 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00062 * 0.02562 * 7 2 1 9 9 O 1.34834 * 120.00021 * 179.97438 * 7 2 1 10 10 C 1.35744 * 117.00197 * 185.05985 * 9 7 2 11 11 C 1.38948 * 120.09297 * 354.47741 * 10 9 7 12 12 C 1.37949 * 119.90698 * 180.10222 * 11 10 9 13 13 C 1.38596 * 120.41702 * 359.97438 * 12 11 10 14 14 C 1.38470 * 119.93524 * 359.85958 * 13 12 11 15 15 C 1.38597 * 120.09582 * 174.51044 * 10 9 7 16 16 O 1.35855 * 121.79918 * 180.27161 * 14 13 12 17 17 C 1.42823 * 117.87825 * 342.94264 * 16 14 13 18 18 C 1.53417 * 108.37879 * 49.11626 * 17 16 14 19 19 C 1.50885 * 118.67293 * 179.79304 * 13 12 11 20 20 H 0.97000 * 120.00064 * 359.97438 * 1 2 3 21 21 H 1.07993 * 120.04052 * 0.12633 * 11 10 9 22 22 H 1.08003 * 119.79144 * 179.97438 * 12 11 10 23 23 H 1.08003 * 119.91907 * 359.96732 * 15 10 9 24 24 H 1.08994 * 109.68448 * 289.39210 * 17 16 14 25 25 H 1.09007 * 109.71148 * 168.85262 * 17 16 14 26 26 H 1.08998 * 109.69890 * 54.92376 * 18 17 16 27 27 H 1.08996 * 109.69668 * 175.49282 * 18 17 16 28 28 H 1.08994 * 109.49119 * 42.21880 * 19 13 12 29 29 H 1.09001 * 109.43355 * 282.31015 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1360 -0.0014 9 8 3.3572 -1.2007 -0.0011 10 6 3.9735 -2.4055 -0.1082 11 6 3.2237 -3.5752 -0.0956 12 6 3.8541 -4.7975 -0.2027 13 6 5.2330 -4.8676 -0.3235 14 6 5.9852 -3.7052 -0.3401 15 6 5.3525 -2.4723 -0.2299 16 8 7.3380 -3.7296 -0.4624 17 6 8.0098 -4.9633 -0.2042 18 6 7.3000 -6.0740 -0.9893 19 6 5.8820 -6.2254 -0.4332 20 1 -0.4850 0.8400 0.0004 21 1 2.1488 -3.5274 -0.0025 22 1 3.2695 -5.7056 -0.1922 23 1 5.9370 -1.5642 -0.2399 24 1 7.9720 -5.1857 0.8621 25 1 9.0482 -4.8911 -0.5277 26 1 7.2541 -5.8061 -2.0448 27 1 7.8430 -7.0117 -0.8714 28 1 5.2957 -6.8558 -1.1017 29 1 5.9266 -6.6868 0.5533 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260306146.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:59 Heat of formation + Delta-G solvation = -67.106931 kcal Electronic energy + Delta-G solvation = -14422.713157 eV Core-core repulsion = 11889.761227 eV Total energy + Delta-G solvation = -2532.951930 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60752 -40.17000 -37.39862 -35.01809 -34.37742 -31.23361 -30.78719 -27.40128 -26.24015 -24.18324 -23.50004 -21.10060 -19.82186 -19.29106 -17.70846 -17.08100 -16.79764 -16.24000 -15.77456 -15.43478 -15.36053 -14.95930 -14.41357 -14.23734 -14.01016 -13.86330 -13.53290 -12.93125 -12.85537 -12.10239 -11.97506 -11.84420 -11.68603 -11.45175 -11.20034 -10.86996 -9.46253 -8.86296 -8.51769 -6.25138 0.48891 0.56036 1.30435 1.34533 1.51343 2.24537 2.28529 2.70183 3.01323 3.28019 3.83859 3.87224 3.95279 4.07173 4.31522 4.39007 4.49513 4.60471 4.71223 4.78388 4.92723 5.03515 5.09725 5.26243 5.32516 5.40339 5.63740 5.70080 5.76196 6.04279 6.59358 6.82164 7.54545 8.59501 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.056137 B = 0.007130 C = 0.006391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.659781 B = 3926.335560 C = 4380.028790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.402 4.402 8 H 0.086 0.914 9 O -0.241 6.241 10 C 0.153 3.847 11 C -0.260 4.260 12 C -0.039 4.039 13 C -0.226 4.226 14 C 0.169 3.831 15 C -0.237 4.237 16 O -0.334 6.334 17 C 0.049 3.951 18 C -0.153 4.153 19 C -0.066 4.066 20 H 0.286 0.714 21 H 0.116 0.884 22 H 0.149 0.851 23 H 0.122 0.878 24 H 0.070 0.930 25 H 0.132 0.868 26 H 0.068 0.932 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.394 -11.925 -0.751 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.478 4.478 8 H 0.103 0.897 9 O -0.149 6.149 10 C 0.103 3.897 11 C -0.280 4.280 12 C -0.057 4.057 13 C -0.228 4.228 14 C 0.124 3.876 15 C -0.257 4.257 16 O -0.248 6.248 17 C -0.025 4.025 18 C -0.190 4.190 19 C -0.102 4.102 20 H 0.096 0.904 21 H 0.134 0.866 22 H 0.167 0.833 23 H 0.140 0.860 24 H 0.088 0.912 25 H 0.150 0.850 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.108 0.892 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.425 -11.439 -0.778 18.426 hybrid contribution -0.568 0.726 0.071 0.924 sum 13.857 -10.713 -0.707 17.529 Atomic orbital electron populations 1.69717 1.06770 1.29674 1.49856 1.25241 0.95869 1.02018 0.95393 0.85263 0.78776 0.77616 0.79347 1.19046 1.18848 1.19018 1.20750 0.77766 0.96373 1.52899 0.89696 1.83502 1.21571 1.27162 1.82633 1.19064 0.91806 0.85451 0.93364 1.21238 1.00493 0.92868 1.13355 1.20909 0.93651 0.96698 0.94456 1.19951 0.93849 0.95545 1.13415 1.18134 0.82747 0.92216 0.94527 1.19548 0.91290 0.97647 1.17201 1.85930 1.16022 1.37924 1.84933 1.23354 0.96967 0.81571 1.00571 1.22233 0.96005 1.00697 1.00112 1.20448 0.95763 0.91353 1.02683 0.90449 0.86614 0.83336 0.85959 0.91167 0.85011 0.91372 0.86523 0.89178 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.26 13.96 21.61 0.30 -54.95 15 2 C 0.01 0.80 5.49 84.83 0.47 1.27 15 3 Si 0.97 46.30 28.62 68.60 1.96 48.27 15 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 5 H -0.26 -11.69 7.11 99.48 0.71 -10.98 15 6 H -0.27 -12.86 7.11 99.48 0.71 -12.15 15 7 C -0.40 -24.12 9.95 67.92 0.68 -23.45 15 8 H 0.09 5.28 5.44 -2.91 -0.02 5.27 15 9 O -0.24 -13.66 8.58 -22.71 -0.19 -13.85 15 10 C 0.15 7.59 6.64 22.53 0.15 7.74 15 11 C -0.26 -11.77 9.17 22.37 0.21 -11.57 15 12 C -0.04 -1.38 9.65 22.29 0.22 -1.17 15 13 C -0.23 -7.28 5.76 -19.67 -0.11 -7.39 15 14 C 0.17 6.21 6.47 22.51 0.15 6.36 15 15 C -0.24 -10.38 9.88 22.54 0.22 -10.16 15 16 O -0.33 -10.45 10.27 -91.92 -0.94 -11.40 15 17 C 0.05 0.97 7.03 72.12 0.51 1.48 15 18 C -0.15 -2.59 6.19 30.76 0.19 -2.40 15 19 C -0.07 -1.38 5.86 29.93 0.18 -1.20 15 20 H 0.29 15.71 8.31 -92.71 -0.77 14.93 15 21 H 0.12 5.62 5.64 -2.91 -0.02 5.60 15 22 H 0.15 4.14 8.06 -2.91 -0.02 4.11 15 23 H 0.12 5.25 8.06 -2.91 -0.02 5.22 15 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 15 25 H 0.13 1.77 8.14 -2.38 -0.02 1.75 15 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 15 27 H 0.12 1.14 8.14 -2.39 -0.02 1.12 15 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 15 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 15 Total: -1.00 -68.57 249.20 5.12 -63.45 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.15 Total: 8.99 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 2.84 Total: -40.50 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.30 Total: -54.95 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -1.14 Total: -25.25 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.96 Total: 48.27 kcal Total: -68.57 5.12 -63.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260306146.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.662 kcal (2) G-P(sol) polarization free energy of solvation -68.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds