Wall clock time and date at job start Mon Mar 30 2020 20:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00089 * 2 1 4 4 H 1.48491 * 109.47211 * 264.79838 * 3 2 1 5 5 H 1.48498 * 109.46828 * 24.80319 * 3 2 1 6 6 H 1.48507 * 109.47166 * 144.79873 * 3 2 1 7 7 C 1.37880 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00103 * 6.18019 * 7 2 1 9 9 C 1.50708 * 119.99458 * 186.17603 * 7 2 1 10 10 H 1.08993 * 109.43759 * 34.19943 * 9 7 2 11 11 C 1.53066 * 109.40387 * 274.29914 * 9 7 2 12 12 C 1.53410 * 108.29402 * 191.68785 * 11 9 7 13 13 O 1.42820 * 108.38570 * 64.71332 * 12 11 9 14 14 C 1.35851 * 117.87543 * 310.82393 * 13 12 11 15 15 C 1.39047 * 118.45296 * 196.96418 * 14 13 12 16 16 C 1.38454 * 120.17783 * 180.50288 * 15 14 13 17 17 O 1.35903 * 120.08255 * 179.97438 * 16 15 14 18 18 C 1.38797 * 119.83979 * 359.96689 * 16 15 14 19 19 C 1.38006 * 119.92172 * 0.17774 * 18 16 15 20 20 C 1.38427 * 121.79430 * 17.28894 * 14 13 12 21 21 H 0.97001 * 120.00349 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.69858 * 311.38449 * 11 9 7 23 23 H 1.08996 * 109.69436 * 71.98655 * 11 9 7 24 24 H 1.08999 * 109.67738 * 184.43280 * 12 11 9 25 25 H 1.08993 * 109.67979 * 304.94818 * 12 11 9 26 26 H 1.08006 * 119.91521 * 0.47851 * 15 14 13 27 27 H 0.96698 * 113.99506 * 270.02178 * 17 16 15 28 28 H 1.08005 * 120.04010 * 179.89980 * 18 16 15 29 29 H 1.07997 * 119.80140 * 179.73355 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6065 1.9829 -1.3942 5 1 1.3959 2.6818 0.5873 6 1 3.4874 1.4744 0.8071 7 6 2.0044 -1.1941 0.0005 8 1 1.4691 -2.1267 -0.0997 9 6 3.5049 -1.1978 0.1410 10 1 3.8101 -0.3806 0.7945 11 6 4.1451 -1.0141 -1.2372 12 6 5.6449 -1.3129 -1.1152 13 8 5.8033 -2.6901 -0.7717 14 6 5.0654 -3.1764 0.2601 15 6 5.4490 -4.3809 0.8391 16 6 4.7166 -4.9145 1.8859 17 8 5.0930 -6.0922 2.4500 18 6 3.5971 -4.2435 2.3579 19 6 3.2157 -3.0495 1.7804 20 6 3.9498 -2.5096 0.7367 21 1 -0.4851 0.8400 -0.0004 22 1 3.6899 -1.7032 -1.9485 23 1 4.0012 0.0120 -1.5753 24 1 6.1375 -1.1129 -2.0667 25 1 6.0817 -0.6872 -0.3370 26 1 6.3205 -4.9021 0.4710 27 1 4.6966 -6.8710 2.0360 28 1 3.0224 -4.6575 3.1733 29 1 2.3417 -2.5312 2.1464 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365384.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:20 Heat of formation + Delta-G solvation = -85.360322 kcal Electronic energy + Delta-G solvation = -14804.352770 eV Core-core repulsion = 12270.609314 eV Total energy + Delta-G solvation = -2533.743456 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.60412 -39.46216 -37.12255 -35.95882 -33.80792 -31.26973 -30.57005 -28.32240 -24.97747 -24.20544 -23.12155 -20.87795 -19.56656 -19.09930 -17.72006 -17.41323 -16.89741 -16.38733 -15.73516 -15.44789 -15.12347 -14.76472 -14.57833 -14.38295 -13.70924 -13.24605 -13.05770 -12.79920 -12.54516 -12.19043 -11.80765 -11.69938 -11.52291 -11.32726 -11.06588 -10.66274 -9.53873 -8.99527 -8.30463 -6.34662 0.34676 0.48029 1.33275 1.35841 1.44688 2.32552 2.36381 2.71847 3.02066 3.46564 3.95218 4.04203 4.10603 4.15768 4.26895 4.40161 4.51007 4.66727 4.77905 4.91910 5.04268 5.11500 5.34561 5.37947 5.50710 5.58729 5.75991 5.85341 6.29929 6.48703 6.70881 6.90263 7.29048 8.85683 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.034873 B = 0.010219 C = 0.008393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.715782 B = 2739.286828 C = 3335.400405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.017 3.983 3 Si 0.933 3.067 4 H -0.257 1.257 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.504 4.504 8 H 0.032 0.968 9 C 0.041 3.959 10 H 0.048 0.952 11 C -0.154 4.154 12 C 0.059 3.941 13 O -0.325 6.325 14 C 0.125 3.875 15 C -0.186 4.186 16 C 0.129 3.871 17 O -0.500 6.500 18 C -0.183 4.183 19 C -0.067 4.067 20 C -0.151 4.151 21 H 0.267 0.733 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.136 0.864 25 H 0.068 0.932 26 H 0.147 0.853 27 H 0.411 0.589 28 H 0.142 0.858 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.554 -5.273 0.765 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.182 1.182 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.541 4.541 8 H 0.051 0.949 9 C 0.022 3.978 10 H 0.066 0.934 11 C -0.192 4.192 12 C -0.015 4.015 13 O -0.239 6.239 14 C 0.079 3.921 15 C -0.205 4.205 16 C 0.085 3.915 17 O -0.313 6.313 18 C -0.201 4.201 19 C -0.085 4.085 20 C -0.152 4.152 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.153 0.847 25 H 0.087 0.913 26 H 0.165 0.835 27 H 0.270 0.730 28 H 0.160 0.840 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.860 -4.913 1.007 12.877 hybrid contribution -0.950 0.695 -0.319 1.219 sum 10.910 -4.218 0.688 11.717 Atomic orbital electron populations 1.70043 1.08208 1.28143 1.52142 1.25858 0.95380 1.02788 0.94027 0.85980 0.79547 0.78769 0.79961 1.18153 1.21679 1.16715 1.20988 0.90326 0.93116 1.49704 0.94930 1.18245 0.94706 0.91601 0.93211 0.93389 1.22473 0.95263 1.02150 0.99290 1.23255 0.96391 0.79156 1.02740 1.85866 1.61949 1.28705 1.47379 1.18668 0.90516 0.94046 0.88825 1.20812 1.03932 0.97181 0.98599 1.17920 0.92789 0.88576 0.92233 1.84731 1.72375 1.14534 1.59633 1.21449 0.98252 0.97125 1.03314 1.20953 0.98106 0.95003 0.94464 1.20335 0.95493 0.99923 0.99410 0.92443 0.92274 0.90857 0.84650 0.91342 0.83492 0.73014 0.83981 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.51 13.96 21.45 0.30 -57.21 15 2 C 0.02 0.96 5.47 84.66 0.46 1.42 15 3 Si 0.93 41.83 25.90 68.60 1.78 43.61 15 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 15 6 H -0.24 -10.06 6.13 99.48 0.61 -9.45 15 7 C -0.50 -27.82 7.64 25.60 0.20 -27.63 15 8 H 0.03 2.03 7.89 -2.91 -0.02 2.01 15 9 C 0.04 1.87 1.87 -12.23 -0.02 1.85 15 10 H 0.05 2.21 5.72 -2.39 -0.01 2.20 15 11 C -0.15 -6.02 5.26 30.75 0.16 -5.86 15 12 C 0.06 1.83 7.03 72.12 0.51 2.34 15 13 O -0.32 -11.47 10.27 -91.88 -0.94 -12.42 15 14 C 0.12 4.75 6.47 22.51 0.15 4.90 15 15 C -0.19 -6.15 9.87 22.52 0.22 -5.93 15 16 C 0.13 4.06 6.70 22.45 0.15 4.21 15 17 O -0.50 -12.42 13.50 -92.46 -1.25 -13.67 15 18 C -0.18 -6.26 9.99 22.35 0.22 -6.04 15 19 C -0.07 -2.77 8.99 22.29 0.20 -2.57 15 20 C -0.15 -6.45 5.43 -19.71 -0.11 -6.56 15 21 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15 22 H 0.06 2.47 8.10 -2.39 -0.02 2.45 15 23 H 0.07 2.74 6.39 -2.39 -0.02 2.72 15 24 H 0.14 3.16 8.14 -2.39 -0.02 3.14 15 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 26 H 0.15 4.17 8.06 -2.91 -0.02 4.14 15 27 H 0.41 5.88 9.06 -74.06 -0.67 5.21 15 28 H 0.14 4.16 8.06 -2.91 -0.02 4.14 15 29 H 0.12 5.25 7.34 -2.91 -0.02 5.23 15 Total: -1.00 -66.23 243.89 2.43 -63.80 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.40 Total: 15.74 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 2.14 Total: -39.86 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.30 Total: -57.21 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -2.19 Total: -26.08 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.78 Total: 43.61 kcal Total: -66.23 2.43 -63.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365384.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.557 kcal (2) G-P(sol) polarization free energy of solvation -66.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds