Wall clock time and date at job start Mon Mar 30 2020 20:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30479 * 125.83093 * 2 1 4 4 N 1.40070 * 109.50651 * 179.44309 * 3 2 1 5 5 H 0.96995 * 125.84572 * 179.91517 * 4 3 2 6 6 C 1.35888 * 108.29884 * 0.66995 * 4 3 2 7 7 N 1.34220 * 134.19833 * 179.23844 * 6 4 3 8 8 C 1.30075 * 121.89116 * 180.02562 * 7 6 4 9 9 N 1.36070 * 122.98956 * 0.02562 * 8 7 6 10 10 C 1.37200 * 119.88381 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00439 * 151.37140 * 10 9 8 12 12 C 1.39050 * 119.99746 * 331.36588 * 10 9 8 13 13 N 1.31276 * 119.99763 * 341.94930 * 12 10 9 14 14 Si 1.86796 * 120.00094 * 161.94018 * 12 10 9 15 15 H 1.48506 * 109.47030 * 94.45023 * 14 12 10 16 16 H 1.48498 * 109.47606 * 214.45085 * 14 12 10 17 17 H 1.48498 * 109.47418 * 334.45706 * 14 12 10 18 18 C 1.35371 * 120.23779 * 359.97438 * 9 8 7 19 19 O 1.21810 * 121.23987 * 179.97438 * 18 9 8 20 20 C 1.40410 * 106.58539 * 359.50821 * 6 4 3 21 21 H 1.09004 * 109.47096 * 269.99802 * 1 2 3 22 22 H 1.09000 * 109.47049 * 30.00092 * 1 2 3 23 23 H 1.09000 * 109.47082 * 150.00230 * 1 2 3 24 24 H 1.08004 * 118.50677 * 179.97438 * 8 7 6 25 25 H 0.97001 * 119.99793 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2708 1.0579 0.0000 4 7 3.6150 0.6642 0.0128 5 1 4.3811 1.2591 0.0143 6 6 3.6619 -0.6939 0.0058 7 7 4.6559 -1.5958 -0.0008 8 6 4.4227 -2.8754 -0.0073 9 7 3.1671 -3.3997 -0.0084 10 6 2.9946 -4.7608 -0.0159 11 1 2.1130 -5.1959 0.4310 12 6 3.9549 -5.5800 -0.5992 13 7 4.8281 -5.0731 -1.4383 14 14 4.0026 -7.4017 -0.1887 15 1 3.2322 -8.1590 -1.2077 16 1 5.4113 -7.8713 -0.1834 17 1 3.4019 -7.6231 1.1512 18 6 2.0874 -2.5831 -0.0020 19 8 0.9553 -3.0327 -0.0033 20 6 2.3309 -1.1409 0.0001 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 5.2640 -3.5527 -0.0129 25 1 5.4982 -5.6445 -1.8449 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260371303.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:26 Heat of formation + Delta-G solvation = 38.954652 kcal Electronic energy + Delta-G solvation = -14560.669133 eV Core-core repulsion = 11961.068787 eV Total energy + Delta-G solvation = -2599.600347 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.84856 -40.75533 -38.21638 -36.07212 -34.00750 -33.43689 -30.57183 -28.99783 -27.63415 -25.30986 -24.00633 -21.31428 -20.36547 -19.80845 -18.55956 -17.70925 -17.08961 -16.69446 -15.92021 -15.42701 -15.37929 -14.96015 -14.24652 -14.13231 -13.80543 -13.43835 -13.32507 -13.02041 -12.78215 -12.14288 -12.08313 -11.61509 -11.00029 -10.85745 -10.68589 -10.14479 -9.25439 -8.76963 -6.55786 -0.03751 0.81108 1.40261 1.47758 1.51318 1.53155 1.61800 2.07557 2.45775 2.52544 3.07613 3.31491 3.53516 3.95830 4.02067 4.34454 4.72606 4.75329 4.91565 4.96221 5.16023 5.46762 5.51766 6.00665 6.11184 6.39146 6.57322 6.70478 7.22381 7.33464 8.27284 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.048093 B = 0.009530 C = 0.008172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.066611 B = 2937.236513 C = 3425.349046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.143 3.857 3 N -0.288 5.288 4 N -0.464 5.464 5 H 0.454 0.546 6 C 0.337 3.663 7 N -0.579 5.579 8 C 0.402 3.598 9 N -0.366 5.366 10 C -0.381 4.381 11 H 0.104 0.896 12 C 0.023 3.977 13 N -0.871 5.871 14 Si 1.014 2.986 15 H -0.271 1.271 16 H -0.255 1.255 17 H -0.260 1.260 18 C 0.516 3.484 19 O -0.579 6.579 20 C -0.390 4.390 21 H 0.093 0.907 22 H 0.099 0.901 23 H 0.070 0.930 24 H 0.217 0.783 25 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 2.858 2.276 3.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.029 4.029 3 N -0.110 5.110 4 N -0.181 5.181 5 H 0.302 0.698 6 C 0.095 3.905 7 N -0.312 5.312 8 C 0.119 3.881 9 N -0.067 5.067 10 C -0.508 4.508 11 H 0.122 0.878 12 C -0.186 4.186 13 N -0.503 5.503 14 Si 0.834 3.166 15 H -0.196 1.196 16 H -0.178 1.178 17 H -0.183 1.183 18 C 0.315 3.685 19 O -0.461 6.461 20 C -0.406 4.406 21 H 0.112 0.888 22 H 0.118 0.882 23 H 0.089 0.911 24 H 0.232 0.768 25 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.381 4.173 2.135 4.886 hybrid contribution -0.171 -1.497 -0.211 1.521 sum 1.210 2.676 1.924 3.511 Atomic orbital electron populations 1.20317 0.84075 1.04004 1.04317 1.22326 0.98263 0.87698 0.94634 1.76898 0.85688 1.21050 1.27327 1.45515 1.07130 1.01466 1.63965 0.69793 1.19378 0.90267 0.87228 0.93634 1.67379 1.31717 0.99476 1.32645 1.25019 0.88324 0.89189 0.85611 1.42859 1.05909 1.09029 1.48867 1.20243 1.11070 0.78540 1.40974 0.87782 1.26546 0.93991 1.06533 0.91489 1.69772 1.17338 1.40970 1.22223 0.84628 0.79156 0.73437 0.79411 1.19614 1.17844 1.18340 1.18143 0.84973 0.85976 0.79408 1.90621 1.22439 1.78674 1.54386 1.21204 0.95353 0.93928 1.30155 0.88828 0.88183 0.91147 0.76757 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.22 10.32 71.24 0.74 -1.49 15 2 C 0.14 5.79 7.23 43.37 0.31 6.10 15 3 N -0.29 -10.82 12.60 -47.02 -0.59 -11.41 15 4 N -0.46 -16.88 7.37 -55.50 -0.41 -17.29 15 5 H 0.45 12.78 8.96 -213.35 -1.91 10.87 15 6 C 0.34 14.77 8.53 133.85 1.14 15.91 15 7 N -0.58 -25.80 10.37 -196.15 -2.03 -27.83 15 8 C 0.40 18.86 10.26 180.06 1.85 20.71 15 9 N -0.37 -18.95 2.76 -474.26 -1.31 -20.26 15 10 C -0.38 -19.56 9.13 84.05 0.77 -18.79 15 11 H 0.10 5.52 7.61 -2.91 -0.02 5.50 15 12 C 0.02 1.03 4.97 84.97 0.42 1.45 15 13 N -0.87 -40.40 11.20 21.67 0.24 -40.16 15 14 Si 1.01 35.26 29.59 68.60 2.03 37.28 15 15 H -0.27 -9.47 7.11 99.48 0.71 -8.76 15 16 H -0.25 -8.07 7.11 99.48 0.71 -7.36 15 17 H -0.26 -8.95 7.11 99.48 0.71 -8.25 15 18 C 0.52 27.62 7.61 86.24 0.66 28.28 15 19 O -0.58 -33.04 16.29 -4.70 -0.08 -33.11 15 20 C -0.39 -18.55 6.32 -20.05 -0.13 -18.67 15 21 H 0.09 2.70 8.14 -2.38 -0.02 2.68 15 22 H 0.10 2.58 8.14 -2.39 -0.02 2.56 15 23 H 0.07 2.53 7.51 -2.39 -0.02 2.51 15 24 H 0.22 9.56 6.12 -2.91 -0.02 9.55 15 25 H 0.30 12.45 8.31 -92.71 -0.77 11.68 15 Total: -1.00 -61.26 230.67 2.95 -58.31 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -0.66 Total: 20.98 kcal Atomic # 6 Polarization: 27.73 SS G_CDS: 5.76 Total: 33.49 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -4.10 Total: -116.96 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.08 Total: -33.11 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.28 kcal Total: -61.26 2.95 -58.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260371303.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.267 kcal (2) G-P(sol) polarization free energy of solvation -61.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds