Wall clock time and date at job start Mon Mar 30 2020 20:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00138 * 2 1 4 4 H 1.48504 * 109.47257 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47294 * 299.99884 * 3 2 1 6 6 H 1.48506 * 109.47067 * 60.00029 * 3 2 1 7 7 C 1.37876 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00977 * 185.78308 * 7 2 1 9 9 C 1.50708 * 119.99371 * 5.78187 * 7 2 1 10 10 H 1.09001 * 109.43580 * 335.01721 * 9 7 2 11 11 C 1.53073 * 109.40066 * 94.91264 * 9 7 2 12 12 C 1.53404 * 108.29168 * 168.21171 * 11 9 7 13 13 O 1.42815 * 108.37401 * 295.32169 * 12 11 9 14 14 C 1.35851 * 117.86940 * 49.20380 * 13 12 11 15 15 C 1.39200 * 118.47009 * 163.04390 * 14 13 12 16 16 C 1.37995 * 120.33134 * 179.59147 * 15 14 13 17 17 C 1.38206 * 120.01525 * 359.96653 * 16 15 14 18 18 C 1.38616 * 119.91828 * 0.09312 * 17 16 15 19 19 O 1.35899 * 119.89440 * 179.97438 * 18 17 16 20 20 C 1.38264 * 121.79453 * 342.72431 * 14 13 12 21 21 H 0.97000 * 119.99820 * 354.98085 * 1 2 3 22 22 H 1.09000 * 109.69478 * 287.91219 * 11 9 7 23 23 H 1.09000 * 109.69764 * 48.50855 * 11 9 7 24 24 H 1.09007 * 109.68316 * 175.60059 * 12 11 9 25 25 H 1.08994 * 109.68181 * 55.04728 * 12 11 9 26 26 H 1.07998 * 119.83874 * 359.58384 * 15 14 13 27 27 H 1.07995 * 119.99428 * 179.97438 * 16 15 14 28 28 H 1.08002 * 120.03742 * 180.02562 * 17 16 15 29 29 H 0.96699 * 114.00072 * 274.18587 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0804 -1.1965 0.0948 9 6 1.2567 -2.4959 -0.1304 10 1 0.2340 -2.3638 0.2229 11 6 1.2366 -2.9253 -1.5995 12 6 0.7407 -4.3752 -1.6706 13 8 1.6948 -5.2101 -1.0134 14 6 2.1179 -4.8394 0.2232 15 6 2.7508 -5.7890 1.0203 16 6 3.2035 -5.4518 2.2796 17 6 3.0300 -4.1658 2.7552 18 6 2.3993 -3.2162 1.9666 19 8 2.2286 -1.9519 2.4349 20 6 1.9411 -3.5531 0.6984 21 1 -0.4850 0.8368 0.0735 22 1 0.5633 -2.2785 -2.1621 23 1 2.2422 -2.8600 -2.0151 24 1 0.6431 -4.6791 -2.7129 25 1 -0.2249 -4.4577 -1.1718 26 1 2.8883 -6.7947 0.6515 27 1 3.6934 -6.1929 2.8935 28 1 3.3845 -3.9014 3.7405 29 1 1.4306 -1.8345 2.9682 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260388744.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:41 Heat of formation + Delta-G solvation = -80.457684 kcal Electronic energy + Delta-G solvation = -15118.664442 eV Core-core repulsion = 12585.133580 eV Total energy + Delta-G solvation = -2533.530862 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.52404 -39.11308 -36.92960 -35.82768 -33.41437 -31.41629 -29.93257 -28.11289 -25.05336 -24.33594 -22.92340 -20.68991 -19.26393 -18.55716 -17.91860 -17.01578 -16.80290 -16.37862 -15.80269 -15.25236 -15.02700 -14.59872 -14.38761 -13.80540 -13.44467 -12.96024 -12.90988 -12.65401 -12.52275 -12.23198 -12.15794 -11.60135 -11.46181 -10.99388 -10.82427 -10.47479 -9.28746 -8.97557 -8.07449 -6.09338 0.49097 0.58625 1.37550 1.40647 1.51936 2.43988 2.50450 2.88530 3.19096 3.62836 4.14547 4.17304 4.20636 4.31446 4.40485 4.49314 4.59384 4.71620 5.01394 5.04611 5.13187 5.37572 5.52476 5.54916 5.62088 5.79330 5.92893 5.95771 6.33583 6.56205 6.91789 7.16351 7.50312 9.00143 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.031066 B = 0.012047 C = 0.009397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.082770 B = 2323.695108 C = 2978.912259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.023 3.977 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.467 4.467 8 H 0.031 0.969 9 C 0.071 3.929 10 H 0.039 0.961 11 C -0.140 4.140 12 C 0.064 3.936 13 O -0.327 6.327 14 C 0.109 3.891 15 C -0.171 4.171 16 C -0.077 4.077 17 C -0.194 4.194 18 C 0.132 3.868 19 O -0.486 6.486 20 C -0.185 4.185 21 H 0.260 0.740 22 H 0.062 0.938 23 H 0.048 0.952 24 H 0.130 0.870 25 H 0.058 0.942 26 H 0.148 0.852 27 H 0.167 0.833 28 H 0.143 0.857 29 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -9.585 2.846 10.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.505 4.505 8 H 0.050 0.950 9 C 0.053 3.947 10 H 0.057 0.943 11 C -0.179 4.179 12 C -0.011 4.011 13 O -0.242 6.242 14 C 0.064 3.936 15 C -0.189 4.189 16 C -0.095 4.095 17 C -0.212 4.212 18 C 0.087 3.913 19 O -0.295 6.295 20 C -0.186 4.186 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.147 0.853 25 H 0.077 0.923 26 H 0.166 0.834 27 H 0.185 0.815 28 H 0.161 0.839 29 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.803 -9.496 2.369 10.180 hybrid contribution -0.338 1.563 0.197 1.611 sum 2.465 -7.933 2.565 8.694 Atomic orbital electron populations 1.69981 1.06775 1.27197 1.53190 1.25404 0.95415 1.01419 0.95191 0.85702 0.78775 0.80763 0.77510 1.20446 1.20785 1.20534 1.20832 0.92070 0.90615 1.46991 0.95025 1.17702 0.95912 0.90921 0.90185 0.94272 1.22249 1.00302 0.95520 0.99803 1.23131 0.89966 0.89725 0.98253 1.85852 1.59162 1.51178 1.28012 1.18998 0.97033 0.92103 0.85435 1.20838 1.04165 0.99273 0.94635 1.21043 0.97951 0.95901 0.94602 1.21592 1.04596 0.93634 1.01394 1.18503 0.96586 0.84413 0.91772 1.84938 1.47112 1.25742 1.71749 1.21068 1.04831 0.94397 0.98332 0.93055 0.91959 0.93343 0.85267 0.92340 0.83415 0.81534 0.83912 0.75778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.45 12.76 21.45 0.27 -53.17 15 2 C 0.02 1.27 5.45 84.66 0.46 1.73 15 3 Si 0.95 45.19 29.54 68.60 2.03 47.22 15 4 H -0.28 -13.47 7.11 99.48 0.71 -12.77 15 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 15 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 15 7 C -0.47 -26.09 5.73 25.60 0.15 -25.94 15 8 H 0.03 1.88 7.82 -2.91 -0.02 1.86 15 9 C 0.07 3.62 2.35 -12.24 -0.03 3.59 15 10 H 0.04 2.22 7.23 -2.39 -0.02 2.20 15 11 C -0.14 -6.30 5.49 30.75 0.17 -6.13 15 12 C 0.06 2.30 7.03 72.12 0.51 2.81 15 13 O -0.33 -12.60 10.27 -91.88 -0.94 -13.54 15 14 C 0.11 4.39 6.47 22.51 0.15 4.53 15 15 C -0.17 -5.50 9.93 22.44 0.22 -5.28 15 16 C -0.08 -2.20 10.03 22.20 0.22 -1.97 15 17 C -0.19 -6.44 9.98 22.35 0.22 -6.21 15 18 C 0.13 5.60 6.43 22.54 0.14 5.74 15 19 O -0.49 -21.53 10.93 -92.41 -1.01 -22.54 15 20 C -0.18 -8.42 5.44 -19.66 -0.11 -8.53 15 21 H 0.26 14.26 8.32 -92.71 -0.77 13.49 15 22 H 0.06 2.86 8.14 -2.39 -0.02 2.84 15 23 H 0.05 2.23 8.10 -2.39 -0.02 2.21 15 24 H 0.13 3.65 8.14 -2.38 -0.02 3.63 15 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 26 H 0.15 3.88 8.06 -2.91 -0.02 3.86 15 27 H 0.17 3.20 8.06 -2.91 -0.02 3.18 15 28 H 0.14 3.96 8.06 -2.91 -0.02 3.94 15 29 H 0.39 14.42 9.06 -74.06 -0.67 13.75 15 Total: -1.00 -65.14 248.28 2.95 -62.19 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.49 Total: 15.50 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 2.11 Total: -35.66 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.27 Total: -53.17 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.95 Total: -36.08 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.14 2.95 -62.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388744.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.267 kcal (2) G-P(sol) polarization free energy of solvation -65.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds