Wall clock time and date at job start Mon Mar 30 2020 20:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39440 * 126.63756 * 2 1 4 4 C 1.41281 * 126.17177 * 359.97438 * 3 2 1 5 5 H 1.08002 * 120.00171 * 0.02562 * 4 3 2 6 6 C 1.39726 * 120.00073 * 180.02562 * 4 3 2 7 7 N 1.30981 * 119.99763 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00370 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47020 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47199 * 120.00171 * 8 6 4 11 11 H 1.48502 * 109.47073 * 240.00573 * 8 6 4 12 12 N 1.34755 * 107.64982 * 180.02562 * 3 2 1 13 13 C 1.32506 * 109.16470 * 0.02562 * 12 3 2 14 14 C 1.41060 * 131.59718 * 180.02562 * 13 12 3 15 15 C 1.36008 * 119.45542 * 179.97438 * 14 13 12 16 16 C 1.40671 * 119.74231 * 0.02562 * 15 14 13 17 17 F 1.35100 * 119.88310 * 180.02562 * 16 15 14 18 18 C 1.35074 * 120.24224 * 359.97438 * 16 15 14 19 19 N 1.36147 * 126.63630 * 180.02562 * 2 1 3 20 20 H 1.09000 * 109.47040 * 89.97271 * 1 2 3 21 21 H 1.09000 * 109.46998 * 209.97292 * 1 2 3 22 22 H 1.09004 * 109.47505 * 329.96972 * 1 2 3 23 23 H 0.96994 * 120.00160 * 179.97438 * 7 6 4 24 24 H 1.07998 * 120.27389 * 359.93713 * 14 13 12 25 25 H 1.07998 * 120.13421 * 180.02562 * 15 14 13 26 26 H 1.08006 * 119.69194 * 179.74731 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3391 1.1189 0.0000 4 6 1.9215 2.4686 -0.0005 5 1 0.8684 2.7081 -0.0005 6 6 2.8710 3.4937 -0.0010 7 7 4.1482 3.2032 -0.0015 8 14 2.3190 5.2782 -0.0024 9 1 0.8352 5.3373 -0.0022 10 1 2.8412 5.9588 1.2097 11 1 2.8417 5.9571 -1.2153 12 7 3.6133 0.6805 -0.0006 13 6 3.6174 -0.6446 -0.0015 14 6 4.6751 -1.5778 -0.0019 15 6 4.3932 -2.9083 -0.0023 16 6 3.0536 -3.3378 -0.0030 17 9 2.7703 -4.6588 -0.0029 18 6 2.0495 -2.4344 -0.0026 19 7 2.3194 -1.0925 -0.0005 20 1 -0.3633 0.0005 -1.0277 21 1 -0.3633 -0.8902 0.5134 22 1 -0.3634 0.8897 0.5143 23 1 4.8074 3.9148 -0.0022 24 1 5.7005 -1.2386 -0.0024 25 1 5.1945 -3.6324 -0.0022 26 1 1.0243 -2.7740 -0.0072 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260393973.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:46 Heat of formation + Delta-G solvation = 13.512929 kcal Electronic energy + Delta-G solvation = -14205.329523 eV Core-core repulsion = 11584.705979 eV Total energy + Delta-G solvation = -2620.623544 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.85257 -42.96227 -37.75174 -35.20312 -34.38266 -31.90883 -30.37346 -28.27559 -26.81344 -23.78214 -23.04616 -21.68071 -19.15409 -18.43508 -17.94670 -16.96620 -16.77986 -16.59699 -15.93014 -15.70827 -15.05675 -14.74637 -14.04977 -13.90164 -13.65366 -13.20847 -13.02116 -12.76509 -12.40263 -12.31069 -12.14933 -11.83020 -11.57321 -11.01597 -10.20314 -9.32740 -8.40528 -8.39153 -6.29586 -0.07116 0.49572 1.40884 1.43119 1.59114 1.97153 2.19888 2.28701 2.77347 3.28569 3.57408 3.58298 3.82388 4.06257 4.26302 4.53535 4.72977 4.90447 4.90726 4.98842 5.10492 5.19375 5.28635 5.54556 5.62689 5.88289 6.22662 6.61980 6.86636 7.01537 7.78304 8.55446 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.053785 B = 0.008134 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.468446 B = 3441.720791 C = 3947.044312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 C -0.227 4.227 3 C 0.198 3.802 4 C -0.467 4.467 5 H 0.095 0.905 6 C 0.022 3.978 7 N -0.798 5.798 8 Si 0.991 3.009 9 H -0.249 1.249 10 H -0.270 1.270 11 H -0.270 1.270 12 N -0.515 5.515 13 C 0.162 3.838 14 C -0.078 4.078 15 C -0.134 4.134 16 C 0.043 3.957 17 F -0.128 7.128 18 C 0.006 3.994 19 N -0.336 5.336 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.277 0.723 24 H 0.159 0.841 25 H 0.178 0.822 26 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.923 -7.434 0.040 7.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.338 4.338 3 C 0.072 3.928 4 C -0.500 4.500 5 H 0.113 0.887 6 C -0.195 4.195 7 N -0.423 5.423 8 Si 0.811 3.189 9 H -0.173 1.173 10 H -0.195 1.195 11 H -0.195 1.195 12 N -0.240 5.240 13 C -0.078 4.078 14 C -0.100 4.100 15 C -0.157 4.157 16 C 0.019 3.981 17 F -0.107 7.107 18 C -0.121 4.121 19 N -0.010 5.010 20 H 0.075 0.925 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.176 0.824 25 H 0.196 0.804 26 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.093 -6.828 0.042 7.142 hybrid contribution -0.651 0.054 -0.010 0.654 sum -2.744 -6.774 0.032 7.308 Atomic orbital electron populations 1.19695 0.85485 1.02148 1.01208 1.21820 0.94866 0.84233 1.32869 1.18869 0.86660 0.93666 0.93634 1.19140 0.94972 0.88330 1.47540 0.88720 1.26910 0.94360 1.05925 0.92278 1.70221 1.02332 1.35564 1.34148 0.85031 0.79959 0.75467 0.78410 1.17252 1.19521 1.19531 1.71573 1.22777 1.03655 1.26018 1.22135 0.84779 0.92601 1.08268 1.20206 0.97506 0.90336 1.01970 1.21065 0.95409 0.95697 1.03554 1.16400 0.93066 0.77665 1.11006 1.91477 1.94354 1.30071 1.94820 1.21429 1.01596 0.81372 1.07693 1.42203 1.08922 1.04588 1.45245 0.92470 0.91749 0.91117 0.91336 0.82376 0.80434 0.80299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.03 10.08 71.23 0.72 -0.31 15 2 C -0.23 -11.02 7.15 42.18 0.30 -10.72 15 3 C 0.20 11.29 6.66 39.73 0.26 11.56 15 4 C -0.47 -25.85 9.11 23.38 0.21 -25.64 15 5 H 0.09 4.81 7.31 -2.91 -0.02 4.79 15 6 C 0.02 1.19 5.49 85.18 0.47 1.66 15 7 N -0.80 -45.57 11.93 21.79 0.26 -45.31 15 8 Si 0.99 39.50 29.56 68.60 2.03 41.53 15 9 H -0.25 -9.31 7.11 99.48 0.71 -8.61 15 10 H -0.27 -10.44 7.11 99.48 0.71 -9.73 15 11 H -0.27 -10.45 7.11 99.48 0.71 -9.75 15 12 N -0.52 -30.13 9.52 -186.57 -1.78 -31.91 15 13 C 0.16 8.03 7.77 134.08 1.04 9.08 15 14 C -0.08 -3.03 10.10 22.44 0.23 -2.80 15 15 C -0.13 -4.14 10.05 22.35 0.22 -3.92 15 16 C 0.04 1.38 7.25 22.14 0.16 1.54 15 17 F -0.13 -3.67 17.26 44.97 0.78 -2.89 15 18 C 0.01 0.20 10.78 83.18 0.90 1.10 15 19 N -0.34 -15.29 2.93 -335.19 -0.98 -16.27 15 20 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 21 H 0.06 2.01 8.13 -2.39 -0.02 1.99 15 22 H 0.07 2.60 7.57 -2.38 -0.02 2.58 15 23 H 0.28 14.34 8.30 -92.71 -0.77 13.58 15 24 H 0.16 5.50 8.06 -2.91 -0.02 5.47 15 25 H 0.18 3.95 8.06 -2.91 -0.02 3.92 15 26 H 0.18 5.21 8.05 -2.91 -0.02 5.18 15 Total: -1.00 -67.95 240.59 6.02 -61.93 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.20 Total: 11.37 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 4.52 Total: -18.46 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -2.50 Total: -93.48 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.78 Total: -2.89 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -67.95 6.02 -61.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393973.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.443 kcal (2) G-P(sol) polarization free energy of solvation -67.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds