Wall clock time and date at job start Mon Mar 30 2020 20:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37748 * 119.47445 * 2 1 4 4 C 1.38278 * 120.54462 * 180.02562 * 3 2 1 5 5 C 1.38073 * 119.29246 * 359.86141 * 4 3 2 6 6 C 1.38781 * 120.16059 * 0.03839 * 5 4 3 7 7 C 1.38930 * 121.14596 * 0.19506 * 6 5 4 8 8 C 1.50976 * 115.37471 * 179.27012 * 7 6 5 9 9 C 1.54141 * 110.45282 * 20.61497 * 8 7 6 10 10 H 1.08998 * 111.09965 * 213.71250 * 9 8 7 11 11 C 1.50698 * 111.09786 * 89.65446 * 9 8 7 12 12 H 1.08005 * 119.99819 * 3.43311 * 11 9 8 13 13 C 1.37875 * 120.00046 * 183.42652 * 11 9 8 14 14 N 1.31511 * 120.00192 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47261 * 60.00310 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00304 * 15 13 11 19 19 S 1.77430 * 130.57844 * 180.19323 * 6 5 4 20 20 H 1.09008 * 109.46919 * 89.99358 * 1 2 3 21 21 H 1.08999 * 109.47396 * 210.00095 * 1 2 3 22 22 H 1.09003 * 109.46968 * 330.00451 * 1 2 3 23 23 H 1.07997 * 119.72905 * 359.97438 * 3 2 1 24 24 H 1.07999 * 120.35926 * 179.82775 * 4 3 2 25 25 H 1.07999 * 119.92448 * 180.02562 * 5 4 3 26 26 H 1.09006 * 109.29722 * 260.35917 * 8 7 6 27 27 H 1.09004 * 109.32160 * 140.88792 * 8 7 6 28 28 H 0.97001 * 119.99934 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1847 1.1992 0.0000 4 6 3.5673 1.2250 -0.0005 5 6 4.2652 0.0337 0.0018 6 6 3.5823 -1.1745 0.0039 7 6 2.1936 -1.2150 -0.0004 8 6 1.5866 -2.5973 -0.0148 9 6 2.6064 -3.6385 0.4870 10 1 2.4778 -4.5921 -0.0250 11 6 2.5140 -3.8119 1.9811 12 1 1.7588 -3.2801 2.5408 13 6 3.3935 -4.6496 2.6336 14 7 4.3133 -5.2970 1.9522 15 14 3.2785 -4.8651 4.4856 16 1 4.3295 -5.8108 4.9401 17 1 1.9407 -5.4040 4.8391 18 1 3.4744 -3.5515 5.1499 19 16 4.1875 -2.8423 0.0117 20 1 -0.3633 0.0001 -1.0278 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8901 0.5138 23 1 1.6318 2.1269 -0.0004 24 1 4.0956 2.1670 -0.0033 25 1 5.3451 0.0419 0.0019 26 1 1.2869 -2.8485 -1.0323 27 1 0.7090 -2.6126 0.6315 28 1 4.3728 -5.1854 0.9904 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260412061.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:50 Heat of formation + Delta-G solvation = 3.081195 kcal Electronic energy + Delta-G solvation = -12516.115798 eV Core-core repulsion = 10428.960325 eV Total energy + Delta-G solvation = -2087.155473 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.92445 -34.66242 -32.58632 -32.10954 -28.74411 -26.40574 -24.86847 -22.61604 -21.16846 -20.21020 -17.24812 -16.42479 -14.98542 -14.72778 -14.38535 -13.94461 -13.85547 -13.30655 -12.66585 -12.14436 -12.03035 -11.90587 -11.73328 -11.40780 -11.19562 -10.76918 -10.45952 -10.30050 -10.12761 -9.45836 -8.91354 -8.73968 -8.54683 -8.05212 -6.75320 -6.21222 -4.36076 1.82029 1.85159 2.84527 3.33050 3.36055 3.54667 3.71178 4.19041 4.34752 5.16585 5.26223 5.31089 5.39882 5.63399 5.68947 5.81729 5.90130 6.03358 6.09238 6.12197 6.37128 6.46341 6.65430 6.78905 6.89679 6.98079 7.07368 7.45807 7.71701 8.09542 8.51204 9.29430 10.69716 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.010094 C = 0.009425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.107972 B = 2773.269088 C = 2970.132035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 C -0.145 4.145 4 C -0.109 4.109 5 C -0.114 4.114 6 C -0.038 4.038 7 C -0.095 4.095 8 C -0.070 4.070 9 C 0.087 3.913 10 H 0.069 0.931 11 C -0.557 4.557 12 H 0.063 0.937 13 C 0.028 3.972 14 N -0.860 5.860 15 Si 1.072 2.928 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.284 1.284 19 S -0.264 6.264 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.115 0.885 24 H 0.119 0.881 25 H 0.116 0.884 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 8.711 -2.871 10.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.072 4.072 3 C -0.166 4.166 4 C -0.129 4.129 5 C -0.139 4.139 6 C -0.152 4.152 7 C -0.102 4.102 8 C -0.109 4.109 9 C -0.035 4.035 10 H 0.087 0.913 11 C -0.602 4.602 12 H 0.082 0.918 13 C -0.183 4.183 14 N -0.493 5.493 15 Si 0.898 3.102 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.210 1.210 19 S -0.014 6.014 20 H 0.083 0.917 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.133 0.867 24 H 0.137 0.863 25 H 0.134 0.866 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.302 7.229 -1.927 8.178 hybrid contribution -1.650 1.500 -1.101 2.487 sum -4.952 8.730 -3.029 10.484 Atomic orbital electron populations 1.20786 0.91947 1.02474 1.01696 1.19575 0.95448 0.91881 1.00332 1.20579 0.94268 0.96572 1.05191 1.20873 0.94107 0.96993 1.00913 1.20358 0.99252 0.90483 1.03785 1.22222 0.95664 0.97321 0.99983 1.20845 0.92994 0.94706 1.01617 1.20929 0.99603 0.89976 1.00357 1.21901 0.87329 0.94618 0.99673 0.91338 1.22043 1.18950 1.28630 0.90546 0.91849 1.26052 0.92334 0.92512 1.07426 1.70773 1.30575 1.37732 1.10267 0.83496 0.76487 0.76866 0.73356 1.20307 1.20973 1.20965 1.86359 1.32284 0.98312 1.84490 0.91713 0.91462 0.92043 0.86736 0.86259 0.86570 0.91611 0.90276 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.76 36.00 0.35 -1.23 15 2 C -0.07 -1.25 5.90 -104.31 -0.62 -1.87 15 3 C -0.14 -2.34 9.61 -39.75 -0.38 -2.72 15 4 C -0.11 -1.79 10.08 -39.63 -0.40 -2.19 15 5 C -0.11 -2.22 10.05 -39.44 -0.40 -2.62 15 6 C -0.04 -0.85 6.48 -39.12 -0.25 -1.11 15 7 C -0.10 -2.01 5.94 -103.74 -0.62 -2.62 15 8 C -0.07 -1.49 5.29 -27.15 -0.14 -1.63 15 9 C 0.09 2.16 2.84 -27.29 -0.08 2.08 15 10 H 0.07 1.74 8.01 -51.93 -0.42 1.33 15 11 C -0.56 -15.03 8.58 -34.44 -0.30 -15.33 15 12 H 0.06 1.69 7.65 -52.48 -0.40 1.29 15 13 C 0.03 0.78 5.35 -17.82 -0.10 0.68 15 14 N -0.86 -25.07 13.42 55.43 0.74 -24.33 15 15 Si 1.07 24.14 29.90 -169.99 -5.08 19.05 15 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 19 S -0.26 -6.64 20.88 -107.50 -2.24 -8.88 15 20 H 0.06 0.81 8.14 -51.92 -0.42 0.39 15 21 H 0.07 0.97 6.76 -51.93 -0.35 0.62 15 22 H 0.06 0.74 8.07 -51.93 -0.42 0.32 15 23 H 0.11 1.49 8.06 -52.49 -0.42 1.06 15 24 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 25 H 0.12 2.11 8.06 -52.49 -0.42 1.68 15 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 27 H 0.08 1.59 6.69 -51.93 -0.35 1.25 15 28 H 0.28 8.08 6.15 -40.82 -0.25 7.83 15 LS Contribution 249.20 15.07 3.76 3.76 Total: -1.00 -29.67 249.20 -8.85 -38.52 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -3.10 Total: 0.43 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: -2.92 Total: -28.56 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.74 Total: -24.33 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.08 Total: 19.05 kcal Atomic # 16 Polarization: -6.64 SS G_CDS: -2.24 Total: -8.88 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.67 -8.85 -38.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412061.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.604 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds