Wall clock time and date at job start Mon Mar 30 2020 20:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47145 * 2 1 4 4 C 1.53004 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47227 * 54.99576 * 4 3 2 6 6 O 1.42901 * 109.46763 * 294.99613 * 4 3 2 7 7 C 1.50700 * 109.47272 * 175.00056 * 4 3 2 8 8 C 1.37635 * 120.13023 * 94.72170 * 7 4 3 9 9 C 1.38618 * 120.24744 * 179.70537 * 8 7 4 10 10 C 1.38658 * 120.50170 * 0.59219 * 9 8 7 11 11 C 1.37602 * 120.24513 * 359.68586 * 10 9 8 12 12 C 1.40700 * 120.12403 * 274.99989 * 7 4 3 13 13 C 1.41394 * 120.24688 * 0.02562 * 12 7 4 14 14 H 1.08000 * 119.99834 * 25.12370 * 13 12 7 15 15 C 1.39942 * 120.00390 * 205.12411 * 13 12 7 16 16 N 1.30829 * 119.99891 * 15.45384 * 15 13 12 17 17 Si 1.86797 * 120.00138 * 195.45960 * 15 13 12 18 18 H 1.48495 * 109.47495 * 59.99851 * 17 15 13 19 19 H 1.48503 * 109.47004 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46817 * 299.99526 * 17 15 13 21 21 H 1.08993 * 109.47221 * 60.00554 * 1 2 3 22 22 H 1.09006 * 109.46853 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47224 * 299.99685 * 1 2 3 24 24 H 1.09004 * 109.47434 * 120.00127 * 2 1 3 25 25 H 1.08999 * 109.47267 * 239.99813 * 2 1 3 26 26 H 1.09002 * 109.46748 * 299.99654 * 3 2 1 27 27 H 1.08999 * 109.47191 * 59.99766 * 3 2 1 28 28 H 0.96705 * 114.00313 * 300.00195 * 6 4 3 29 29 H 1.08000 * 119.87335 * 359.97438 * 8 7 4 30 30 H 1.08000 * 119.74867 * 180.30203 * 9 8 7 31 31 H 1.07998 * 119.87714 * 179.70428 * 10 9 8 32 32 H 1.08004 * 120.12245 * 180.02562 * 11 10 9 33 33 H 0.96991 * 119.99788 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 8 4.0468 0.8730 1.2202 7 6 4.0723 2.8579 -0.1245 8 6 4.3954 3.5775 1.0034 9 6 4.8634 4.8775 0.8920 10 6 5.0000 5.4721 -0.3531 11 6 4.6775 4.7735 -1.4939 12 6 4.2071 3.4509 -1.3933 13 6 3.8721 2.7236 -2.5586 14 1 3.1603 1.9132 -2.5034 15 6 4.4628 3.0537 -3.7835 16 7 5.5286 3.8119 -3.8125 17 14 3.7295 2.4121 -5.3772 18 1 2.3325 2.8977 -5.5102 19 1 4.5353 2.9006 -6.5249 20 1 3.7381 0.9271 -5.3634 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.6766 1.9562 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.7617 1.3474 2.0132 29 1 4.2880 3.1260 1.9786 30 1 5.1192 5.4331 1.7821 31 1 5.3610 6.4872 -0.4279 32 1 4.7850 5.2384 -2.4628 33 1 5.9378 4.0410 -4.6615 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260775239.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:16 Heat of formation + Delta-G solvation = -59.149341 kcal Electronic energy + Delta-G solvation = -14932.798265 eV Core-core repulsion = 12536.024497 eV Total energy + Delta-G solvation = -2396.773768 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.41683 -36.16935 -33.82760 -33.48469 -30.59750 -29.30034 -27.47861 -25.30843 -23.12648 -20.96096 -20.66874 -19.59012 -17.39588 -16.01969 -15.51984 -14.97604 -14.49821 -13.93924 -13.82599 -13.13749 -12.76748 -12.72098 -12.47857 -11.77507 -11.44671 -11.38468 -11.32313 -11.10734 -10.93286 -10.71099 -10.54571 -10.25946 -10.19345 -9.76110 -9.53214 -9.21591 -8.87940 -7.38781 -7.33511 -6.76563 -4.40199 2.76909 2.96510 3.04790 3.07303 3.22684 3.90569 4.60588 5.17421 5.31589 5.42393 5.50750 5.68313 5.90135 6.04004 6.12438 6.16889 6.23199 6.35123 6.40842 6.48040 6.53863 6.72165 6.81535 6.89128 7.08155 7.25476 7.38910 7.58115 7.86466 7.99388 8.07462 8.23607 8.38067 8.59860 8.86525 8.94788 10.16851 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.012692 C = 0.008257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.939470 B = 2205.555763 C = 3390.189354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.142 4.142 4 C 0.167 3.833 5 H 0.101 0.899 6 O -0.569 6.569 7 C -0.226 4.226 8 C -0.086 4.086 9 C -0.240 4.240 10 C -0.108 4.108 11 C -0.162 4.162 12 C 0.119 3.881 13 C -0.462 4.462 14 H 0.080 0.920 15 C 0.076 3.924 16 N -0.793 5.793 17 Si 0.906 3.094 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.265 1.265 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.361 0.639 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 -2.990 2.978 7.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.180 4.180 4 C 0.109 3.891 5 H 0.119 0.881 6 O -0.374 6.374 7 C -0.228 4.228 8 C -0.105 4.105 9 C -0.259 4.259 10 C -0.127 4.127 11 C -0.181 4.181 12 C 0.117 3.883 13 C -0.492 4.492 14 H 0.098 0.902 15 C -0.141 4.141 16 N -0.419 5.419 17 Si 0.730 3.270 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.189 1.189 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.208 0.792 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.157 -3.322 2.381 6.580 hybrid contribution -0.418 0.334 -0.440 0.693 sum -5.575 -2.988 1.941 6.617 Atomic orbital electron populations 1.21783 0.96707 1.00785 1.01515 1.21495 0.94809 0.97588 1.02005 1.22278 0.97121 0.96032 1.02541 1.20520 0.90864 0.91904 0.85770 0.88126 1.86531 1.77724 1.57087 1.16060 1.20210 1.12636 0.95949 0.93980 1.20196 0.99956 0.94293 0.96012 1.20331 1.13009 0.96666 0.95943 1.20705 1.00673 0.97896 0.93404 1.21384 1.04905 0.94643 0.97210 1.17355 0.88709 0.91195 0.91076 1.19557 1.22582 1.15270 0.91767 0.90199 1.25910 0.93387 0.93735 1.01115 1.69810 1.14791 1.28776 1.28492 0.86398 0.80146 0.80144 0.80282 1.18807 1.20339 1.18910 0.92877 0.93392 0.93188 0.91991 0.92242 0.90602 0.92692 0.79219 0.89566 0.89643 0.89552 0.86214 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.15 0.37 -1.59 16 2 C -0.12 -1.85 5.83 -26.74 -0.16 -2.01 16 3 C -0.14 -2.52 4.73 -26.73 -0.13 -2.64 16 4 C 0.17 3.46 2.55 -27.88 -0.07 3.38 16 5 H 0.10 2.26 7.05 -51.93 -0.37 1.90 16 6 O -0.57 -10.95 12.53 -35.23 -0.44 -11.39 16 7 C -0.23 -5.34 5.12 -103.91 -0.53 -5.87 16 8 C -0.09 -1.93 9.29 -39.66 -0.37 -2.30 16 9 C -0.24 -5.44 10.05 -39.29 -0.39 -5.83 16 10 C -0.11 -2.58 10.02 -39.66 -0.40 -2.98 16 11 C -0.16 -4.22 8.69 -38.87 -0.34 -4.55 16 12 C 0.12 3.10 5.58 -106.82 -0.60 2.50 16 13 C -0.46 -11.80 8.11 -37.74 -0.31 -12.11 16 14 H 0.08 1.93 6.15 -52.49 -0.32 1.61 16 15 C 0.08 1.88 5.19 -17.34 -0.09 1.79 16 16 N -0.79 -20.35 10.86 55.55 0.60 -19.74 16 17 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.93 7.82 -51.93 -0.41 0.52 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.08 1.45 7.41 -51.93 -0.38 1.07 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.36 5.77 7.33 45.56 0.33 6.10 16 29 H 0.09 1.65 6.40 -52.49 -0.34 1.32 16 30 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.12 3.20 6.12 -52.48 -0.32 2.88 16 33 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 272.76 15.07 4.11 4.11 Total: -1.00 -27.19 272.76 -7.66 -34.85 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -3.90 Total: 10.98 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: -3.01 Total: -32.20 kcal Atomic # 7 Polarization: -20.35 SS G_CDS: 0.60 Total: -19.74 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.44 Total: -11.39 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.19 -7.66 -34.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260775239.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.301 kcal (2) G-P(sol) polarization free energy of solvation -27.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds