Wall clock time and date at job start Mon Mar 30 2020 20:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46817 * 2 1 4 4 C 1.52993 * 109.47412 * 120.00299 * 2 1 3 5 5 H 1.08997 * 109.46918 * 299.99854 * 4 2 1 6 6 O 1.42900 * 109.47306 * 179.97438 * 4 2 1 7 7 C 1.50705 * 109.47385 * 59.99678 * 4 2 1 8 8 C 1.38662 * 119.87135 * 84.72507 * 7 4 2 9 9 C 1.38613 * 120.49645 * 179.72279 * 8 7 4 10 10 C 1.37636 * 120.24963 * 0.55632 * 9 8 7 11 11 C 1.40699 * 119.74454 * 359.72416 * 10 9 8 12 12 C 1.41395 * 120.24465 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99941 * 204.37309 * 12 11 10 14 14 C 1.39942 * 119.99983 * 24.35954 * 12 11 10 15 15 N 1.30821 * 120.00228 * 17.86979 * 14 12 11 16 16 Si 1.86802 * 119.99947 * 197.86715 * 14 12 11 17 17 H 1.48501 * 109.47189 * 60.00316 * 16 14 12 18 18 H 1.48505 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47111 * 300.00323 * 16 14 12 20 20 C 1.37592 * 119.87663 * 265.00179 * 7 4 2 21 21 H 1.09002 * 109.46913 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46826 * 299.99398 * 1 2 3 23 23 H 1.08996 * 109.47742 * 59.99674 * 1 2 3 24 24 H 1.08998 * 109.46716 * 240.00617 * 2 1 3 25 25 H 1.09007 * 109.46715 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47054 * 300.00126 * 3 2 1 27 27 H 1.08997 * 109.47251 * 60.00306 * 3 2 1 28 28 H 0.96700 * 113.99939 * 300.00029 * 6 4 2 29 29 H 1.08000 * 119.75036 * 0.02562 * 8 7 4 30 30 H 1.08004 * 119.87121 * 180.25981 * 9 8 7 31 31 H 1.08003 * 120.12563 * 179.70236 * 10 9 8 32 32 H 0.97000 * 120.00406 * 179.97438 * 15 14 12 33 33 H 1.08002 * 120.13134 * 0.02562 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1391 6 8 3.4690 -0.7218 1.2488 7 6 1.5377 -2.1421 1.2492 8 6 2.2329 -3.1205 0.5547 9 6 1.7857 -4.4325 0.5508 10 6 0.6380 -4.7758 1.2284 11 6 -0.0788 -3.7903 1.9316 12 6 -1.2589 -4.1314 2.6318 13 1 -2.0062 -3.3774 2.8300 14 6 -1.4586 -5.4461 3.0676 15 7 -0.4451 -6.2692 3.1497 16 14 -3.1725 -6.0258 3.5324 17 1 -4.0740 -5.8959 2.3596 18 1 -3.1157 -7.4473 3.9586 19 1 -3.6902 -5.1951 4.6491 20 6 0.3879 -2.4626 1.9335 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.8620 -1.1637 0.4837 29 1 3.1323 -2.8592 0.0169 30 1 2.3374 -5.1872 0.0099 31 1 0.2887 -5.7978 1.2199 32 1 -0.5834 -7.1804 3.4521 33 1 -0.1548 -1.6981 2.4697 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260781185.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:21 Heat of formation + Delta-G solvation = -56.848674 kcal Electronic energy + Delta-G solvation = -14820.165986 eV Core-core repulsion = 12423.491983 eV Total energy + Delta-G solvation = -2396.674004 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.70620 -36.46231 -33.77630 -33.54106 -29.87225 -29.75215 -26.65128 -25.29122 -24.88770 -20.94555 -20.56031 -19.67472 -17.34079 -16.06511 -15.32560 -15.14801 -14.46717 -14.21492 -13.64140 -13.16651 -12.93207 -12.49430 -12.30168 -11.93019 -11.78352 -11.59831 -11.21046 -11.04199 -10.98072 -10.70516 -10.60076 -10.47388 -10.31150 -9.98898 -9.45132 -9.16168 -9.07027 -7.47415 -7.28343 -6.76339 -4.36869 2.78382 2.94139 3.05805 3.08313 3.21756 3.92361 4.57740 4.93376 5.13242 5.27411 5.44775 5.68945 5.86932 5.90464 5.96050 6.09141 6.13781 6.26196 6.33482 6.39593 6.41943 6.63855 6.73894 6.91272 7.04788 7.22710 7.37280 7.56680 7.85477 8.01528 8.02885 8.14156 8.28066 8.62513 8.88337 8.96253 10.18498 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.042062 B = 0.007515 C = 0.006785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.523041 B = 3725.132387 C = 4125.495697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.141 4.141 4 C 0.156 3.844 5 H 0.093 0.907 6 O -0.563 6.563 7 C -0.091 4.091 8 C -0.233 4.233 9 C -0.104 4.104 10 C -0.164 4.164 11 C 0.110 3.890 12 C -0.465 4.465 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.794 5.794 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.211 4.211 21 H 0.072 0.928 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.369 0.631 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.281 0.719 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.127 6.440 -4.523 7.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.138 4.138 3 C -0.199 4.199 4 C 0.097 3.903 5 H 0.111 0.889 6 O -0.369 6.369 7 C -0.091 4.091 8 C -0.253 4.253 9 C -0.123 4.123 10 C -0.184 4.184 11 C 0.108 3.892 12 C -0.495 4.495 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.420 5.420 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.230 4.230 21 H 0.091 0.909 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.216 0.784 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.092 0.908 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.093 6.521 -3.874 7.663 hybrid contribution -0.691 -0.763 -0.228 1.055 sum 0.402 5.758 -4.102 7.081 Atomic orbital electron populations 1.21811 0.94495 1.03246 1.00743 1.21734 0.96971 0.96100 0.98964 1.21782 1.01217 0.95887 1.00993 1.20819 0.79558 0.92912 0.97010 0.88896 1.86503 1.19855 1.80800 1.49706 1.19806 0.96527 0.93854 0.98928 1.19994 1.02267 0.93727 1.09268 1.20631 0.97133 0.94815 0.99709 1.21341 0.96881 1.00262 0.99872 1.17577 0.91807 0.90686 0.89127 1.19533 1.03612 0.94543 1.31809 0.90520 1.25897 0.98285 0.96520 0.93407 1.69819 1.31507 1.06671 1.33965 0.86390 0.82652 0.78033 0.79769 1.18837 1.20344 1.19010 1.20734 0.98372 0.96994 1.06937 0.90947 0.92990 0.93451 0.91297 0.92434 0.93332 0.92989 0.78387 0.89891 0.89503 0.86526 0.90835 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.70 37.16 0.32 -1.92 16 2 C -0.12 -1.82 2.68 -90.62 -0.24 -2.06 16 3 C -0.14 -1.84 9.05 37.16 0.34 -1.51 16 4 C 0.16 2.81 2.80 -27.88 -0.08 2.73 16 5 H 0.09 1.71 8.05 -51.93 -0.42 1.29 16 6 O -0.56 -9.89 12.46 -35.23 -0.44 -10.33 16 7 C -0.09 -1.97 4.27 -104.70 -0.45 -2.41 16 8 C -0.23 -5.09 9.34 -39.29 -0.37 -5.46 16 9 C -0.10 -2.45 10.02 -39.66 -0.40 -2.85 16 10 C -0.16 -4.28 8.70 -38.87 -0.34 -4.62 16 11 C 0.11 2.93 5.58 -106.82 -0.60 2.33 16 12 C -0.47 -12.33 9.05 -37.74 -0.34 -12.68 16 13 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 14 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 15 N -0.79 -20.69 10.95 55.55 0.61 -20.08 16 16 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 17 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 C -0.21 -5.07 8.01 -38.87 -0.31 -5.38 16 21 H 0.07 1.30 6.41 -51.93 -0.33 0.97 16 22 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.37 5.45 7.38 45.56 0.34 5.79 16 29 H 0.08 1.57 6.60 -52.49 -0.35 1.22 16 30 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 31 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16 32 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 33 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 272.96 15.07 4.11 4.11 Total: -1.00 -27.57 272.96 -7.29 -34.86 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -3.99 Total: 9.77 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: -2.55 Total: -31.98 kcal Atomic # 7 Polarization: -20.69 SS G_CDS: 0.61 Total: -20.08 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.44 Total: -10.33 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.57 -7.29 -34.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260781185.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.989 kcal (2) G-P(sol) polarization free energy of solvation -27.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds