Wall clock time and date at job start Mon Mar 30 2020 20:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46817 * 2 1 4 4 C 1.52993 * 109.47412 * 120.00299 * 2 1 3 5 5 H 1.08997 * 109.46918 * 299.99854 * 4 2 1 6 6 O 1.42900 * 109.47306 * 179.97438 * 4 2 1 7 7 C 1.50705 * 109.47385 * 59.99678 * 4 2 1 8 8 C 1.38662 * 119.87135 * 84.72507 * 7 4 2 9 9 C 1.38613 * 120.49645 * 179.72279 * 8 7 4 10 10 C 1.37636 * 120.24963 * 0.55632 * 9 8 7 11 11 C 1.40699 * 119.74454 * 359.72416 * 10 9 8 12 12 C 1.41395 * 120.24465 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99941 * 204.37309 * 12 11 10 14 14 C 1.39942 * 119.99983 * 24.35954 * 12 11 10 15 15 N 1.30821 * 120.00228 * 17.86979 * 14 12 11 16 16 Si 1.86802 * 119.99947 * 197.86715 * 14 12 11 17 17 H 1.48501 * 109.47189 * 60.00316 * 16 14 12 18 18 H 1.48505 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47111 * 300.00323 * 16 14 12 20 20 C 1.37592 * 119.87663 * 265.00179 * 7 4 2 21 21 H 1.09002 * 109.46913 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46826 * 299.99398 * 1 2 3 23 23 H 1.08996 * 109.47742 * 59.99674 * 1 2 3 24 24 H 1.08998 * 109.46716 * 240.00617 * 2 1 3 25 25 H 1.09007 * 109.46715 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47054 * 300.00126 * 3 2 1 27 27 H 1.08997 * 109.47251 * 60.00306 * 3 2 1 28 28 H 0.96700 * 113.99939 * 300.00029 * 6 4 2 29 29 H 1.08000 * 119.75036 * 0.02562 * 8 7 4 30 30 H 1.08004 * 119.87121 * 180.25981 * 9 8 7 31 31 H 1.08003 * 120.12563 * 179.70236 * 10 9 8 32 32 H 0.97000 * 120.00406 * 179.97438 * 15 14 12 33 33 H 1.08002 * 120.13134 * 0.02562 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1391 6 8 3.4690 -0.7218 1.2488 7 6 1.5377 -2.1421 1.2492 8 6 2.2329 -3.1205 0.5547 9 6 1.7857 -4.4325 0.5508 10 6 0.6380 -4.7758 1.2284 11 6 -0.0788 -3.7903 1.9316 12 6 -1.2589 -4.1314 2.6318 13 1 -2.0062 -3.3774 2.8300 14 6 -1.4586 -5.4461 3.0676 15 7 -0.4451 -6.2692 3.1497 16 14 -3.1725 -6.0258 3.5324 17 1 -4.0740 -5.8959 2.3596 18 1 -3.1157 -7.4473 3.9586 19 1 -3.6902 -5.1951 4.6491 20 6 0.3879 -2.4626 1.9335 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.8620 -1.1637 0.4837 29 1 3.1323 -2.8592 0.0169 30 1 2.3374 -5.1872 0.0099 31 1 0.2887 -5.7978 1.2199 32 1 -0.5834 -7.1804 3.4521 33 1 -0.1548 -1.6981 2.4697 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260781185.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:20 Heat of formation + Delta-G solvation = -72.874362 kcal Electronic energy + Delta-G solvation = -14820.860912 eV Core-core repulsion = 12423.491983 eV Total energy + Delta-G solvation = -2397.368930 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30521 -38.12003 -35.41098 -35.04727 -31.72523 -31.50585 -27.80682 -27.18986 -26.42341 -22.69644 -22.26811 -21.14370 -19.13188 -17.68255 -16.97189 -16.72184 -16.15240 -15.75315 -15.15574 -14.83572 -14.40976 -14.14978 -13.75079 -13.42020 -13.17621 -12.95881 -12.87637 -12.73607 -12.59189 -12.22558 -12.17314 -11.93996 -11.76208 -11.48801 -11.26412 -11.01848 -10.62171 -9.37529 -9.12907 -8.64007 -6.35268 0.98829 1.07336 1.36479 1.47775 1.53351 2.19702 2.71476 3.54141 3.72512 3.87523 4.07695 4.15565 4.42974 4.50717 4.66164 4.71300 4.83059 4.85102 5.01202 5.05407 5.11519 5.13033 5.23837 5.31129 5.42049 5.50673 5.56626 5.69740 6.01165 6.09715 6.17891 6.37462 6.70081 6.85126 6.94144 7.04192 8.33062 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.042062 B = 0.007515 C = 0.006785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.523041 B = 3725.132387 C = 4125.495697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.135 4.135 4 C 0.161 3.839 5 H 0.088 0.912 6 O -0.567 6.567 7 C -0.086 4.086 8 C -0.230 4.230 9 C -0.110 4.110 10 C -0.194 4.194 11 C 0.079 3.921 12 C -0.504 4.504 13 H 0.074 0.926 14 C 0.035 3.965 15 N -0.828 5.828 16 Si 0.981 3.019 17 H -0.260 1.260 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.223 4.223 21 H 0.040 0.960 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.382 0.618 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.287 0.713 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 7.646 -5.294 9.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.193 4.193 4 C 0.102 3.898 5 H 0.106 0.894 6 O -0.375 6.375 7 C -0.087 4.087 8 C -0.249 4.249 9 C -0.128 4.128 10 C -0.214 4.214 11 C 0.077 3.923 12 C -0.534 4.534 13 H 0.092 0.908 14 C -0.180 4.180 15 N -0.454 5.454 16 Si 0.801 3.199 17 H -0.184 1.184 18 H -0.192 1.192 19 H -0.184 1.184 20 C -0.243 4.243 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.232 0.768 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.542 7.736 -4.659 9.161 hybrid contribution -0.696 -1.068 -0.044 1.275 sum 0.846 6.668 -4.702 8.203 Atomic orbital electron populations 1.21785 0.94831 1.01512 1.02032 1.21662 0.96570 0.97452 0.97345 1.21730 1.01421 0.94040 1.02062 1.20759 0.79971 0.90603 0.98441 0.89425 1.86492 1.19227 1.80947 1.50791 1.20242 0.95251 0.96108 0.97088 1.20437 1.03082 0.92915 1.08502 1.20948 0.96362 0.96382 0.99133 1.21308 0.98639 0.99537 1.01918 1.17943 0.92534 0.91984 0.89859 1.19801 1.04293 0.95757 1.33546 0.90759 1.26755 1.02316 0.96059 0.92828 1.69880 1.33605 1.07206 1.34755 0.85279 0.77186 0.77887 0.79514 1.18449 1.19164 1.18366 1.20878 0.99520 0.96220 1.07687 0.94126 0.92765 0.91184 0.90888 0.92031 0.91369 0.92879 0.76817 0.86168 0.87254 0.88408 0.90202 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.70 71.98 0.63 -3.59 16 2 C -0.11 -3.11 2.68 -10.79 -0.03 -3.14 16 3 C -0.14 -3.05 9.05 71.98 0.65 -2.40 16 4 C 0.16 5.50 2.80 29.85 0.08 5.58 16 5 H 0.09 3.10 8.05 -2.39 -0.02 3.09 16 6 O -0.57 -18.22 12.46 -148.98 -1.86 -20.08 16 7 C -0.09 -3.67 4.27 -19.91 -0.09 -3.76 16 8 C -0.23 -9.66 9.34 22.46 0.21 -9.45 16 9 C -0.11 -5.13 10.02 22.22 0.22 -4.90 16 10 C -0.19 -10.46 8.70 22.73 0.20 -10.26 16 11 C 0.08 4.34 5.58 -21.29 -0.12 4.22 16 12 C -0.50 -27.81 9.05 23.46 0.21 -27.60 16 13 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 14 C 0.03 1.80 5.14 85.26 0.44 2.24 16 15 N -0.83 -44.49 10.95 21.83 0.24 -44.25 16 16 Si 0.98 38.89 29.59 68.60 2.03 40.92 16 17 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 18 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 19 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 20 C -0.22 -10.96 8.01 22.73 0.18 -10.78 16 21 H 0.04 1.44 6.41 -2.39 -0.02 1.42 16 22 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 1.35 7.68 -2.38 -0.02 1.33 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.38 9.86 7.38 -74.06 -0.55 9.32 16 29 H 0.12 4.10 6.60 -2.91 -0.02 4.08 16 30 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 31 H 0.10 5.52 6.16 -2.91 -0.02 5.51 16 32 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 33 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -60.41 272.96 3.55 -56.86 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.55 Total: 30.39 kcal Atomic # 6 Polarization: -66.43 SS G_CDS: 2.59 Total: -63.84 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.24 Total: -44.25 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -1.86 Total: -20.08 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -60.41 3.55 -56.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260781185.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.012 kcal (2) G-P(sol) polarization free energy of solvation -60.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds