Wall clock time and date at job start Mon Mar 30 2020 20:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47118 * 2 1 4 4 C 1.50700 * 109.46590 * 119.99878 * 2 1 3 5 5 C 1.34450 * 125.78359 * 120.00570 * 4 2 1 6 6 C 1.41509 * 106.80183 * 179.97438 * 5 4 2 7 7 C 1.34290 * 107.02460 * 359.97438 * 6 5 4 8 8 O 1.34195 * 125.78887 * 299.99450 * 4 2 1 9 9 C 1.51446 * 110.25289 * 180.02562 * 7 6 5 10 10 H 1.09000 * 110.42493 * 102.04482 * 9 7 6 11 11 C 1.50698 * 110.33390 * 224.23640 * 9 7 6 12 12 H 1.08009 * 119.99507 * 115.57621 * 11 9 7 13 13 C 1.37880 * 120.00245 * 295.57539 * 11 9 7 14 14 N 1.31514 * 119.99641 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99774 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47308 * 59.99972 * 15 13 11 17 17 H 1.48504 * 109.46719 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46943 * 299.99777 * 15 13 11 19 19 C 1.54449 * 104.99708 * 343.11920 * 9 7 6 20 20 C 1.51256 * 142.37950 * 179.97438 * 6 5 4 21 21 H 1.09001 * 109.46915 * 300.00220 * 1 2 3 22 22 H 1.09004 * 109.46816 * 59.99680 * 1 2 3 23 23 H 1.08996 * 109.46965 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47354 * 239.99527 * 2 1 3 25 25 H 1.09001 * 109.47408 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47146 * 300.00123 * 3 2 1 27 27 H 1.09002 * 109.46890 * 60.00065 * 3 2 1 28 28 H 1.07997 * 126.59914 * 359.96995 * 5 4 2 29 29 H 0.97001 * 119.99221 * 180.02562 * 14 13 11 30 30 H 1.09002 * 110.94967 * 143.71403 * 19 9 7 31 31 H 1.09001 * 110.94959 * 267.38759 * 19 9 7 32 32 H 1.08999 * 110.34540 * 77.98059 * 20 6 5 33 33 H 1.09005 * 110.38328 * 315.68028 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8085 -1.8081 1.2428 6 6 3.0379 -2.1317 2.6011 7 6 2.3905 -1.2149 3.3385 8 8 1.7807 -0.3545 2.4997 9 6 2.5889 -1.4934 4.8138 10 1 3.3347 -0.8171 5.2317 11 6 1.2834 -1.3533 5.5534 12 1 0.8390 -2.2135 6.0321 13 6 0.6564 -0.1271 5.6190 14 7 1.1974 0.9201 5.0357 15 14 -0.9616 0.0467 6.5364 16 1 -0.7675 -0.3336 7.9587 17 1 -1.4257 1.4552 6.4589 18 1 -1.9780 -0.8435 5.9203 19 6 3.0901 -2.9528 4.8812 20 6 3.7434 -3.1296 3.4923 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1845 -2.3405 0.3817 29 1 0.7564 1.7829 5.0822 30 1 3.8256 -3.0760 5.6761 31 1 2.2582 -3.6449 5.0119 32 1 4.8089 -2.9053 3.5432 33 1 3.5858 -4.1440 3.1257 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260929748.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:40 Heat of formation + Delta-G solvation = 5.259598 kcal Electronic energy + Delta-G solvation = -15210.827509 eV Core-core repulsion = 12816.846722 eV Total energy + Delta-G solvation = -2393.980787 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.50082 -36.37180 -34.72906 -32.69920 -30.62820 -27.46443 -26.82214 -26.66323 -23.66879 -21.80404 -20.25112 -19.40860 -17.87196 -16.54602 -15.52204 -14.84508 -14.60248 -14.23791 -13.80812 -13.49295 -12.63870 -12.46946 -12.11421 -11.91515 -11.82979 -11.57995 -11.33997 -10.92844 -10.87403 -10.72400 -10.61064 -10.53166 -10.29322 -10.02466 -9.51474 -9.21652 -8.49420 -8.44600 -6.89624 -6.05930 -4.14360 2.96557 3.30561 3.35148 3.37577 3.69995 3.91423 4.40580 5.07309 5.25146 5.34312 5.48962 5.62096 5.87397 5.90711 5.94545 6.02309 6.06968 6.15214 6.18380 6.25279 6.43594 6.57244 6.58716 6.61682 6.76467 6.86475 6.95991 7.21150 7.47998 7.53612 7.66168 7.85708 8.22132 8.59762 8.87859 9.51468 11.00969 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.012384 C = 0.008824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.635853 B = 2260.405827 C = 3172.298897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.002 4.002 3 C -0.146 4.146 4 C -0.054 4.054 5 C -0.189 4.189 6 C -0.285 4.285 7 C 0.079 3.921 8 O -0.125 6.125 9 C 0.117 3.883 10 H 0.053 0.947 11 C -0.527 4.527 12 H 0.062 0.938 13 C 0.067 3.933 14 N -0.866 5.866 15 Si 0.893 3.107 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.109 4.109 20 C -0.040 4.040 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.125 0.875 29 H 0.264 0.736 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.611 -2.160 -7.434 7.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 C -0.203 4.203 4 C -0.105 4.105 5 C -0.209 4.209 6 C -0.286 4.286 7 C 0.025 3.975 8 O -0.019 6.019 9 C 0.098 3.902 10 H 0.071 0.929 11 C -0.565 4.565 12 H 0.080 0.920 13 C -0.138 4.138 14 N -0.501 5.501 15 Si 0.721 3.279 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.147 4.147 20 C -0.077 4.077 21 H 0.082 0.918 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.104 0.896 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.143 0.857 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.405 -1.692 -7.380 7.700 hybrid contribution -0.826 0.054 0.194 0.851 sum 0.579 -1.638 -7.186 7.393 Atomic orbital electron populations 1.21844 0.94528 1.02029 1.01963 1.19492 0.95752 0.95455 0.91334 1.21839 1.01139 0.95312 1.02011 1.22058 1.04539 0.98728 0.85171 1.20603 1.05092 0.99377 0.95815 1.21095 1.10030 1.04381 0.93082 1.24412 0.90254 0.86560 0.96266 1.84026 1.58037 1.46480 1.13352 1.18225 0.97470 0.91298 0.83192 0.92914 1.21080 1.05976 0.95145 1.34254 0.91953 1.25034 0.97697 0.95916 0.95142 1.69950 1.38786 1.00052 1.41350 0.86632 0.83870 0.77113 0.80310 1.20058 1.21199 1.20194 1.22459 0.99219 0.98115 0.94908 1.20336 0.97608 0.96025 0.93732 0.91842 0.92664 0.92613 0.89617 0.92639 0.92706 0.91716 0.85699 0.92665 0.91687 0.91488 0.92434 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.18 37.16 0.34 -1.95 16 2 C 0.00 -0.03 3.32 -91.77 -0.31 -0.34 16 3 C -0.15 -2.25 9.18 37.16 0.34 -1.91 16 4 C -0.05 -1.17 5.83 -35.65 -0.21 -1.38 16 5 C -0.19 -4.00 10.79 -39.67 -0.43 -4.43 16 6 C -0.28 -6.56 6.96 -104.50 -0.73 -7.29 16 7 C 0.08 2.05 6.78 -35.33 -0.24 1.81 16 8 O -0.13 -3.26 10.04 4.78 0.05 -3.22 16 9 C 0.12 2.99 2.78 -91.80 -0.25 2.74 16 10 H 0.05 1.44 8.14 -51.93 -0.42 1.01 16 11 C -0.53 -14.57 8.51 -34.44 -0.29 -14.86 16 12 H 0.06 1.67 7.60 -52.48 -0.40 1.27 16 13 C 0.07 1.87 5.34 -17.82 -0.10 1.77 16 14 N -0.87 -25.09 12.12 55.43 0.67 -24.42 16 15 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 C -0.11 -2.28 6.63 -25.18 -0.17 -2.45 16 20 C -0.04 -0.78 6.79 -26.82 -0.18 -0.97 16 21 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.09 1.20 8.10 -51.93 -0.42 0.78 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.39 7.77 -51.93 -0.40 0.98 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 276.35 15.07 4.16 4.16 Total: -1.00 -30.10 276.35 -7.36 -37.46 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.01 Total: -1.12 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: -2.22 Total: -29.25 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.67 Total: -24.42 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.05 Total: -3.22 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.10 -7.36 -37.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929748.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.719 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds