Wall clock time and date at job start Mon Mar 30 2020 20:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.47108 * 2 1 4 4 C 1.34770 * 125.75537 * 89.98656 * 3 2 1 5 5 C 1.40649 * 106.63770 * 180.02562 * 4 3 2 6 6 C 1.34885 * 107.16144 * 359.94318 * 5 4 3 7 7 O 1.33838 * 108.29959 * 0.08491 * 6 5 4 8 8 C 1.50928 * 123.90018 * 180.09070 * 6 5 4 9 9 H 1.09006 * 109.67337 * 256.95794 * 8 6 5 10 10 C 1.50697 * 109.70399 * 136.44627 * 8 6 5 11 11 H 1.08007 * 120.00083 * 241.00853 * 10 8 6 12 12 C 1.37880 * 120.00186 * 61.01084 * 10 8 6 13 13 N 1.31508 * 119.99768 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00107 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47123 * 59.99928 * 14 12 10 16 16 H 1.48498 * 109.47037 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47319 * 300.00337 * 14 12 10 18 18 C 1.53338 * 108.42722 * 16.69383 * 8 6 5 19 19 C 1.53122 * 109.53575 * 309.96120 * 18 8 6 20 20 C 1.50643 * 128.27205 * 179.82890 * 5 4 3 21 21 H 1.09008 * 109.46821 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47157 * 299.99795 * 1 2 3 23 23 H 1.09000 * 109.47398 * 60.00116 * 1 2 3 24 24 H 1.09004 * 109.47157 * 240.00205 * 2 1 3 25 25 H 1.09004 * 109.47544 * 120.00623 * 2 1 3 26 26 H 1.08002 * 126.68156 * 0.05651 * 4 3 2 27 27 H 0.97007 * 119.99903 * 179.97438 * 13 12 10 28 28 H 1.09005 * 109.46011 * 189.94721 * 18 8 6 29 29 H 1.08999 * 109.45979 * 69.98575 * 18 8 6 30 30 H 1.09002 * 109.48215 * 189.98340 * 19 18 8 31 31 H 1.08999 * 109.48244 * 310.01096 * 19 18 8 32 32 H 1.09006 * 109.67356 * 76.75264 * 20 5 4 33 33 H 1.08995 * 109.69620 * 316.19438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1634 1.0937 5 6 2.7370 3.4165 0.6330 6 6 2.7229 3.3726 -0.7150 7 8 2.2942 2.1620 -1.0916 8 6 3.1325 4.5253 -1.5991 9 1 2.2444 5.0118 -2.0027 10 6 3.9912 4.0187 -2.7291 11 1 5.0059 4.3728 -2.8369 12 6 3.4816 3.1033 -3.6254 13 7 2.2459 2.6727 -3.4945 14 14 4.5458 2.4760 -5.0266 15 1 5.7484 1.8040 -4.4722 16 1 3.7695 1.5084 -5.8428 17 1 4.9654 3.6174 -5.8789 18 6 3.9296 5.5255 -0.7532 19 6 3.1546 5.8443 0.5283 20 6 3.1563 4.6142 1.4449 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.1865 1.8559 2.1234 27 1 1.8873 2.0289 -4.1253 28 1 4.0823 6.4422 -1.3228 29 1 4.8964 5.0933 -0.4950 30 1 3.6291 6.6807 1.0415 31 1 2.1276 6.1081 0.2759 32 1 4.1582 4.4548 1.8436 33 1 2.4543 4.7662 2.2647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260969787.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:48 Heat of formation + Delta-G solvation = -10.241808 kcal Electronic energy + Delta-G solvation = -15360.922492 eV Core-core repulsion = 12966.269514 eV Total energy + Delta-G solvation = -2394.652978 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.35103 -36.28759 -33.55317 -32.91291 -30.97731 -29.18737 -27.20791 -24.93410 -23.19294 -21.62530 -20.46995 -19.74337 -17.55310 -16.55983 -15.23730 -14.92275 -14.55127 -14.00397 -13.76569 -13.34855 -12.80686 -12.54512 -12.28854 -11.81076 -11.74119 -11.56803 -11.24911 -11.06390 -10.86710 -10.84638 -10.50289 -10.42030 -10.19108 -9.69471 -9.54337 -9.04316 -8.45825 -8.36640 -6.81513 -6.03242 -4.11749 3.08026 3.31713 3.35836 3.38480 3.73866 4.28088 4.42451 5.28529 5.39809 5.56955 5.69747 5.73284 5.75335 5.78247 6.05164 6.15038 6.19195 6.29270 6.36037 6.43239 6.52412 6.54055 6.59001 6.67252 6.74310 6.96953 7.14188 7.22391 7.49660 7.61731 7.77991 7.91973 8.23446 8.71433 8.93413 9.53646 11.02861 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.020422 B = 0.014319 C = 0.009054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.766497 B = 1954.940941 C = 3091.966505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.032 4.032 3 C -0.071 4.071 4 C -0.208 4.208 5 C -0.261 4.261 6 C 0.087 3.913 7 O -0.098 6.098 8 C 0.111 3.889 9 H 0.048 0.952 10 C -0.531 4.531 11 H 0.062 0.938 12 C 0.068 3.932 13 N -0.859 5.859 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.103 4.103 19 C -0.121 4.121 20 C -0.032 4.032 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.263 0.737 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 -0.977 6.913 7.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.123 4.123 4 C -0.227 4.227 5 C -0.262 4.262 6 C 0.032 3.968 7 O 0.011 5.989 8 C 0.093 3.907 9 H 0.066 0.934 10 C -0.568 4.568 11 H 0.080 0.920 12 C -0.137 4.137 13 N -0.494 5.494 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.141 4.141 19 C -0.159 4.159 20 C -0.069 4.069 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.141 0.859 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.411 -1.215 6.516 6.777 hybrid contribution 0.524 -0.548 -0.463 0.888 sum -0.887 -1.763 6.053 6.367 Atomic orbital electron populations 1.21750 0.95061 1.00934 1.02485 1.19781 0.95551 0.89168 1.02414 1.22339 1.08302 0.95531 0.86081 1.20863 1.09195 0.94899 0.97743 1.19978 1.15057 0.97025 0.94175 1.23648 0.94213 0.86064 0.92840 1.84490 1.61844 1.21501 1.31028 1.17628 0.95859 0.86310 0.90947 0.93438 1.20983 0.99193 1.26335 1.10270 0.92023 1.25006 0.95041 0.96020 0.97680 1.69899 1.13967 1.29942 1.35613 0.86639 0.80505 0.78713 0.82095 1.20254 1.21230 1.20130 1.21605 0.98840 0.98888 0.94727 1.21670 1.00654 0.96607 0.96923 1.19787 0.99370 0.91716 0.96064 0.92821 0.92823 0.92090 0.91004 0.90598 0.85860 0.92681 0.92260 0.92547 0.92935 0.92361 0.92673 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 37.15 0.37 -1.86 16 2 C -0.03 -0.55 6.47 -27.88 -0.18 -0.73 16 3 C -0.07 -1.58 6.58 -35.54 -0.23 -1.82 16 4 C -0.21 -4.43 10.80 -39.90 -0.43 -4.86 16 5 C -0.26 -5.92 5.95 -104.93 -0.62 -6.55 16 6 C 0.09 2.24 6.29 -35.39 -0.22 2.02 16 7 O -0.10 -2.60 7.92 6.35 0.05 -2.55 16 8 C 0.11 2.83 2.46 -92.64 -0.23 2.60 16 9 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 10 C -0.53 -14.64 8.54 -34.44 -0.29 -14.94 16 11 H 0.06 1.66 7.75 -52.48 -0.41 1.25 16 12 C 0.07 1.88 5.14 -17.82 -0.09 1.79 16 13 N -0.86 -24.65 10.70 55.43 0.59 -24.06 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 C -0.10 -2.15 5.16 -26.49 -0.14 -2.29 16 19 C -0.12 -2.19 5.91 -26.46 -0.16 -2.35 16 20 C -0.03 -0.60 6.29 -27.70 -0.17 -0.78 16 21 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 270.70 15.07 4.08 4.08 Total: -1.00 -29.70 270.70 -7.74 -37.44 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.03 Total: -1.55 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: -2.41 Total: -29.75 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.59 Total: -24.06 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: 0.05 Total: -2.55 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.70 -7.74 -37.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969787.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.199 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds