Wall clock time and date at job start Mon Mar 30 2020 20:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34516 * 125.79212 * 2 1 4 4 C 1.41379 * 106.84044 * 179.97438 * 3 2 1 5 5 C 1.34515 * 106.84014 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.78882 * 180.02562 * 5 4 3 7 7 C 1.52998 * 115.54890 * 330.49953 * 6 5 4 8 8 H 1.08999 * 109.47450 * 39.33769 * 7 6 5 9 9 C 1.53004 * 109.47321 * 159.34133 * 7 6 5 10 10 C 1.50702 * 109.47327 * 279.33886 * 7 6 5 11 11 H 1.08010 * 119.99529 * 354.58752 * 10 7 6 12 12 C 1.37872 * 120.00357 * 174.58434 * 10 7 6 13 13 N 1.31523 * 119.99829 * 179.97438 * 12 10 7 14 14 Si 1.86800 * 120.00243 * 0.02562 * 12 10 7 15 15 H 1.48502 * 109.47045 * 89.99737 * 14 12 10 16 16 H 1.48500 * 109.47135 * 210.00173 * 14 12 10 17 17 H 1.48498 * 109.46569 * 330.00021 * 14 12 10 18 18 C 1.52997 * 117.51746 * 116.19456 * 6 5 4 19 19 C 1.52995 * 117.49908 * 184.82635 * 6 5 4 20 20 O 1.34296 * 108.42296 * 0.26188 * 5 4 3 21 21 H 1.09005 * 109.46727 * 90.02136 * 1 2 3 22 22 H 1.08994 * 109.46889 * 210.02808 * 1 2 3 23 23 H 1.09001 * 109.46628 * 330.02816 * 1 2 3 24 24 H 1.08001 * 126.57686 * 359.97438 * 3 2 1 25 25 H 1.08001 * 126.57875 * 179.97438 * 4 3 2 26 26 H 1.09005 * 109.47006 * 180.02562 * 9 7 6 27 27 H 1.08999 * 109.46614 * 299.99584 * 9 7 6 28 28 H 1.08990 * 109.47242 * 59.99680 * 9 7 6 29 29 H 0.97001 * 119.99571 * 180.02562 * 13 12 10 30 30 H 1.09005 * 117.49748 * 214.96703 * 18 6 5 31 31 H 1.08991 * 117.50162 * 359.97438 * 18 6 5 32 32 H 1.08997 * 117.50227 * 359.97438 * 19 6 5 33 33 H 1.09003 * 117.49783 * 144.97503 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2938 1.0911 0.0000 4 6 3.6309 0.6320 0.0006 5 6 3.5814 -0.7123 0.0004 6 6 4.7706 -1.6380 0.0014 7 6 6.0299 -1.0953 -0.6771 8 1 6.1431 -0.0374 -0.4401 9 6 7.2527 -1.8645 -0.1731 10 6 5.9096 -1.2656 -2.1696 11 1 5.0647 -1.7938 -2.5865 12 6 6.8778 -0.7470 -3.0030 13 7 6.7730 -0.8962 -4.3055 14 14 8.3394 0.1660 -2.2821 15 1 9.4389 -0.7948 -2.0118 16 1 8.8060 1.1937 -3.2471 17 1 7.9349 0.8249 -1.0142 18 6 4.9592 -2.5451 1.2189 19 6 4.4974 -3.1390 -0.1133 20 8 2.2925 -1.0895 -0.0062 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3632 0.8903 0.5134 24 1 1.9667 2.1204 -0.0004 25 1 4.5213 1.2432 0.0004 26 1 8.1499 -1.4775 -0.6561 27 1 7.3397 -1.7413 0.9064 28 1 7.1395 -2.9223 -0.4100 29 1 7.4544 -0.5317 -4.8918 30 1 5.9806 -2.7552 1.5365 31 1 4.2235 -2.4721 2.0197 32 1 3.4576 -3.4571 -0.1890 33 1 5.2147 -3.7399 -0.6725 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261131854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:17 Heat of formation + Delta-G solvation = 16.710400 kcal Electronic energy + Delta-G solvation = -15093.595430 eV Core-core repulsion = 12700.111187 eV Total energy + Delta-G solvation = -2393.484243 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.48295 -39.44688 -35.01912 -34.04582 -32.57782 -32.35564 -28.08539 -26.93060 -24.32545 -23.30675 -22.72659 -21.40086 -19.91917 -18.68128 -17.81114 -17.06590 -16.70730 -15.94440 -15.46457 -14.78774 -14.43222 -14.08143 -13.97630 -13.77938 -13.68791 -13.54772 -12.99663 -12.85106 -12.64323 -12.29904 -12.18334 -12.02275 -11.63284 -11.46966 -11.06546 -10.78863 -10.72037 -10.51629 -8.94467 -8.25943 -6.28443 0.83385 1.31180 1.36561 1.46475 1.73936 2.00064 2.34539 3.07293 3.10852 3.68047 3.89728 4.00073 4.19373 4.23192 4.29663 4.60742 4.64676 4.65817 4.73959 4.78715 4.82794 4.88910 4.99371 5.05328 5.19022 5.24716 5.29041 5.32052 5.38642 5.68479 5.70306 5.73941 6.32591 6.36472 6.76780 7.34943 8.91416 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.030689 B = 0.009714 C = 0.008614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.165654 B = 2881.822520 C = 3249.704315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.040 4.040 3 C -0.220 4.220 4 C -0.225 4.225 5 C 0.028 3.972 6 C -0.053 4.053 7 C 0.051 3.949 8 H 0.030 0.970 9 C -0.148 4.148 10 C -0.498 4.498 11 H 0.026 0.974 12 C 0.009 3.991 13 N -0.954 5.954 14 Si 0.943 3.057 15 H -0.262 1.262 16 H -0.300 1.300 17 H -0.244 1.244 18 C -0.146 4.146 19 C -0.164 4.164 20 O -0.194 6.194 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.112 0.888 24 H 0.170 0.830 25 H 0.139 0.861 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.263 0.737 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.360 1.219 12.890 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.089 4.089 3 C -0.239 4.239 4 C -0.244 4.244 5 C -0.022 4.022 6 C -0.054 4.054 7 C 0.032 3.968 8 H 0.048 0.952 9 C -0.205 4.205 10 C -0.536 4.536 11 H 0.044 0.956 12 C -0.188 4.188 13 N -0.595 5.595 14 Si 0.769 3.231 15 H -0.187 1.187 16 H -0.227 1.227 17 H -0.168 1.168 18 C -0.182 4.182 19 C -0.201 4.201 20 O -0.092 6.092 21 H 0.104 0.896 22 H 0.102 0.898 23 H 0.131 0.869 24 H 0.187 0.813 25 H 0.157 0.843 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.396 0.956 12.736 14.759 hybrid contribution 0.818 0.609 -0.751 1.267 sum -6.577 1.565 11.985 13.761 Atomic orbital electron populations 1.20440 0.81921 1.05373 1.04309 1.23257 0.95720 0.83641 1.06300 1.21829 0.91884 1.00560 1.09635 1.21611 0.98883 0.94128 1.09792 1.21566 0.81917 0.94272 1.04416 1.19641 0.91428 0.90313 1.03975 1.18577 0.89660 0.95613 0.92929 0.95226 1.22200 0.97178 1.00983 1.00119 1.21161 1.07091 1.34441 0.90909 0.95592 1.25858 1.01199 0.96836 0.94857 1.70069 1.36646 1.48350 1.04413 0.85903 0.79861 0.78595 0.78757 1.18727 1.22723 1.16792 1.23385 1.04040 1.00358 0.90417 1.22880 1.01839 0.94439 1.00904 1.83868 1.16570 1.36364 1.72372 0.89558 0.89835 0.86944 0.81286 0.84291 0.94764 0.90893 0.92345 0.92783 0.85749 0.88018 0.89343 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.30 10.42 71.24 0.74 -0.55 16 2 C -0.04 -1.29 7.32 24.84 0.18 -1.11 16 3 C -0.22 -7.41 10.81 22.19 0.24 -7.17 16 4 C -0.23 -9.08 10.19 22.19 0.23 -8.85 16 5 C 0.03 1.17 6.64 24.83 0.16 1.34 16 6 C -0.05 -2.20 1.97 -52.93 -0.10 -2.30 16 7 C 0.05 2.36 1.77 -11.54 -0.02 2.34 16 8 H 0.03 1.41 5.61 -2.39 -0.01 1.40 16 9 C -0.15 -5.85 7.43 71.98 0.53 -5.32 16 10 C -0.50 -28.69 8.84 25.60 0.23 -28.47 16 11 H 0.03 1.70 7.96 -2.91 -0.02 1.67 16 12 C 0.01 0.50 5.45 84.65 0.46 0.96 16 13 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 14 Si 0.94 44.92 24.66 68.60 1.69 46.61 16 15 H -0.26 -11.71 6.88 99.48 0.68 -11.03 16 16 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 17 H -0.24 -10.73 6.39 99.48 0.64 -10.09 16 18 C -0.15 -4.62 9.36 30.59 0.29 -4.33 16 19 C -0.16 -6.12 9.24 30.59 0.28 -5.84 16 20 O -0.19 -7.62 10.34 -2.45 -0.03 -7.64 16 21 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 22 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 23 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.17 4.48 8.06 -2.91 -0.02 4.46 16 25 H 0.14 5.57 7.28 -2.91 -0.02 5.55 16 26 H 0.03 1.41 4.00 -2.38 -0.01 1.40 16 27 H 0.07 2.32 6.74 -2.39 -0.02 2.30 16 28 H 0.06 2.24 6.96 -2.39 -0.02 2.23 16 29 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.12 3.43 5.89 -2.38 -0.01 3.42 16 31 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.09 3.21 7.94 -2.39 -0.02 3.19 16 33 H 0.09 3.68 7.29 -2.39 -0.02 3.67 16 Total: -1.00 -70.11 267.38 6.19 -63.92 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.01 Total: 16.99 kcal Atomic # 6 Polarization: -62.53 SS G_CDS: 3.22 Total: -59.31 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.30 Total: -60.57 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.03 Total: -7.64 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.69 Total: 46.61 kcal Total: -70.11 6.19 -63.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.626 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds