Wall clock time and date at job start Mon Mar 30 2020 20:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86797 * 120.00237 * 2 1 4 4 H 1.48493 * 109.47327 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47273 * 300.00342 * 3 2 1 6 6 H 1.48507 * 109.47061 * 60.00148 * 3 2 1 7 7 C 1.38987 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00551 * 179.97438 * 7 2 1 9 9 N 1.37405 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.36282 * 126.11413 * 179.97438 * 9 7 2 11 11 C 1.35245 * 107.57903 * 179.97438 * 10 9 7 12 12 C 1.50704 * 126.00604 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47108 * 240.00428 * 12 11 10 14 14 C 1.52990 * 109.47429 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47022 * 59.99500 * 14 13 12 16 16 C 1.52999 * 109.47427 * 300.00501 * 15 14 13 17 17 C 1.52997 * 109.47091 * 120.00357 * 12 11 10 18 18 C 1.40126 * 107.98431 * 0.02562 * 11 10 9 19 19 N 1.30936 * 108.40756 * 359.97438 * 18 11 10 20 20 H 0.97002 * 119.99634 * 359.97438 * 1 2 3 21 21 H 1.07997 * 126.21304 * 0.24863 * 10 9 7 22 22 H 1.09003 * 109.46625 * 359.97438 * 12 11 10 23 23 H 1.09005 * 109.47008 * 300.00205 * 13 12 11 24 24 H 1.09003 * 109.47353 * 59.99398 * 13 12 11 25 25 H 1.09005 * 109.47311 * 300.00164 * 14 13 12 26 26 H 1.08996 * 109.47723 * 179.97438 * 14 13 12 27 27 H 1.09001 * 109.47127 * 179.97438 * 15 14 13 28 28 H 1.09011 * 109.46752 * 60.00592 * 15 14 13 29 29 H 1.08997 * 109.46694 * 299.99948 * 16 15 14 30 30 H 1.08994 * 109.47038 * 179.97438 * 16 15 14 31 31 H 1.09004 * 109.46960 * 299.99491 * 17 12 11 32 32 H 1.08997 * 109.47120 * 60.00094 * 17 12 11 33 33 H 1.07999 * 125.79605 * 180.02562 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7069 1.3463 0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8882 2.3964 1.2126 7 6 2.0078 -1.2037 -0.0005 8 1 3.0878 -1.2038 -0.0010 9 7 1.3208 -2.3936 -0.0016 10 6 1.8726 -3.6397 -0.0027 11 6 0.8591 -4.5352 -0.0029 12 6 1.0024 -6.0354 -0.0046 13 6 0.3321 -6.6104 -1.2540 14 6 0.4781 -8.1333 -1.2561 15 6 -0.1901 -8.7114 -0.0070 16 6 0.4802 -8.1365 1.2424 17 6 0.3337 -6.6130 1.2444 18 6 -0.3476 -3.8229 -0.0025 19 7 -0.0722 -2.5429 -0.0015 20 1 -0.4850 0.8401 0.0004 21 1 2.9276 -3.8703 0.0009 22 1 2.0600 -6.2993 -0.0061 23 1 -0.7255 -6.3464 -1.2531 24 1 0.8084 -6.1988 -2.1439 25 1 1.5358 -8.3970 -1.2573 26 1 0.0003 -8.5430 -2.1460 27 1 -0.0865 -9.7965 -0.0087 28 1 -1.2478 -8.4478 -0.0058 29 1 1.5378 -8.4000 1.2412 30 1 0.0038 -8.5480 2.1322 31 1 0.8113 -6.2034 2.1345 32 1 -0.7238 -6.3491 1.2454 33 1 -1.3369 -4.2562 -0.0022 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261152108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:26 Heat of formation + Delta-G solvation = 46.056733 kcal Electronic energy + Delta-G solvation = -14743.376935 eV Core-core repulsion = 12383.457996 eV Total energy + Delta-G solvation = -2359.918939 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.56426 -37.70433 -33.52697 -31.44442 -30.32763 -29.96444 -27.35331 -24.78597 -22.09501 -21.94998 -20.59137 -19.24913 -18.69802 -16.96229 -15.42987 -14.96150 -14.24400 -13.80259 -13.77790 -13.43070 -13.17505 -12.87977 -11.98615 -11.95185 -11.77676 -11.51688 -11.33904 -11.19195 -10.76357 -10.72978 -10.67314 -10.47525 -10.06295 -9.76125 -9.58923 -9.29543 -8.55202 -7.99186 -7.00295 -6.48610 -4.18406 2.99526 3.09068 3.14192 3.69863 3.89106 4.32466 4.86034 5.05200 5.09528 5.17860 5.19286 5.65484 5.68065 5.88817 5.91189 5.94669 6.01160 6.07655 6.30637 6.32005 6.39838 6.45495 6.56914 6.59529 6.66297 6.86538 6.94289 6.95884 7.15503 7.30577 7.71775 7.97216 8.32093 8.78240 9.51230 9.77062 10.48408 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.073171 B = 0.006033 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.571787 B = 4640.106376 C = 4681.895840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.047 3.953 3 Si 0.931 3.069 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.329 4.329 8 H 0.114 0.886 9 N -0.155 5.155 10 C -0.054 4.054 11 C -0.267 4.267 12 C 0.011 3.989 13 C -0.106 4.106 14 C -0.119 4.119 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.106 4.106 18 C -0.042 4.042 19 N -0.264 5.264 20 H 0.271 0.729 21 H 0.139 0.861 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.706 -10.515 -0.008 10.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.169 4.169 3 Si 0.755 3.245 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.461 4.461 8 H 0.131 0.869 9 N 0.078 4.922 10 C -0.203 4.203 11 C -0.281 4.281 12 C -0.009 4.009 13 C -0.144 4.144 14 C -0.157 4.157 15 C -0.155 4.155 16 C -0.157 4.157 17 C -0.144 4.144 18 C -0.218 4.218 19 N -0.094 5.094 20 H 0.082 0.918 21 H 0.156 0.844 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.034 -9.116 -0.007 9.175 hybrid contribution 0.733 -0.055 -0.001 0.735 sum 1.767 -9.171 -0.007 9.339 Atomic orbital electron populations 1.70225 1.06081 1.27516 1.36711 1.25590 0.95646 1.00121 0.95523 0.85820 0.79697 0.80571 0.78378 1.18766 1.20003 1.20008 1.19897 0.91585 0.80912 1.53695 0.86871 1.44816 1.03775 1.03730 1.39911 1.21809 0.97627 0.85376 1.15523 1.19254 0.92575 0.93637 1.22612 1.19109 0.97914 0.90810 0.93034 1.21566 1.01035 0.93300 0.98519 1.21573 1.00251 0.96799 0.97072 1.21520 0.99901 0.98809 0.95253 1.21580 1.00245 0.96805 0.97067 1.21575 1.01036 0.93288 0.98516 1.23265 0.97199 0.92260 1.09056 1.78143 0.90635 1.15380 1.25235 0.91796 0.84359 0.92600 0.92295 0.92482 0.92493 0.92830 0.92961 0.92250 0.92490 0.92831 0.92479 0.92289 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.17 11.82 55.49 0.66 -21.52 16 2 C 0.05 1.25 5.50 -17.50 -0.10 1.15 16 3 Si 0.93 19.49 29.55 -169.99 -5.02 14.46 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 7 C -0.33 -9.01 10.26 -14.78 -0.15 -9.17 16 8 H 0.11 2.82 7.83 -52.49 -0.41 2.41 16 9 N -0.16 -4.36 3.74 -11.54 -0.04 -4.40 16 10 C -0.05 -1.33 11.35 -16.64 -0.19 -1.51 16 11 C -0.27 -6.00 4.80 -104.98 -0.50 -6.50 16 12 C 0.01 0.20 2.55 -91.77 -0.23 -0.04 16 13 C -0.11 -1.69 5.09 -26.74 -0.14 -1.82 16 14 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 15 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 16 C -0.12 -1.53 5.92 -26.71 -0.16 -1.69 16 17 C -0.11 -1.69 5.10 -26.71 -0.14 -1.82 16 18 C -0.04 -1.05 11.45 -17.23 -0.20 -1.24 16 19 N -0.26 -7.63 10.42 30.69 0.32 -7.31 16 20 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 21 H 0.14 2.97 8.06 -52.49 -0.42 2.55 16 22 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 23 H 0.06 0.97 8.02 -51.93 -0.42 0.55 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.97 8.02 -51.93 -0.42 0.55 16 33 H 0.14 3.17 8.06 -52.49 -0.42 2.75 16 LS Contribution 272.25 15.07 4.10 4.10 Total: -1.00 -30.35 272.25 -7.13 -37.49 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.03 Total: 3.08 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -2.12 Total: -25.91 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.93 Total: -33.22 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.35 -7.13 -37.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.543 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds