Wall clock time and date at job start Mon Mar 30 2020 20:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86797 * 120.00237 * 2 1 4 4 H 1.48493 * 109.47327 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47273 * 300.00342 * 3 2 1 6 6 H 1.48507 * 109.47061 * 60.00148 * 3 2 1 7 7 C 1.38987 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00551 * 179.97438 * 7 2 1 9 9 N 1.37405 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.36282 * 126.11413 * 179.97438 * 9 7 2 11 11 C 1.35245 * 107.57903 * 179.97438 * 10 9 7 12 12 C 1.50704 * 126.00604 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47108 * 240.00428 * 12 11 10 14 14 C 1.52990 * 109.47429 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47022 * 59.99500 * 14 13 12 16 16 C 1.52999 * 109.47427 * 300.00501 * 15 14 13 17 17 C 1.52997 * 109.47091 * 120.00357 * 12 11 10 18 18 C 1.40126 * 107.98431 * 0.02562 * 11 10 9 19 19 N 1.30936 * 108.40756 * 359.97438 * 18 11 10 20 20 H 0.97002 * 119.99634 * 359.97438 * 1 2 3 21 21 H 1.07997 * 126.21304 * 0.24863 * 10 9 7 22 22 H 1.09003 * 109.46625 * 359.97438 * 12 11 10 23 23 H 1.09005 * 109.47008 * 300.00205 * 13 12 11 24 24 H 1.09003 * 109.47353 * 59.99398 * 13 12 11 25 25 H 1.09005 * 109.47311 * 300.00164 * 14 13 12 26 26 H 1.08996 * 109.47723 * 179.97438 * 14 13 12 27 27 H 1.09001 * 109.47127 * 179.97438 * 15 14 13 28 28 H 1.09011 * 109.46752 * 60.00592 * 15 14 13 29 29 H 1.08997 * 109.46694 * 299.99948 * 16 15 14 30 30 H 1.08994 * 109.47038 * 179.97438 * 16 15 14 31 31 H 1.09004 * 109.46960 * 299.99491 * 17 12 11 32 32 H 1.08997 * 109.47120 * 60.00094 * 17 12 11 33 33 H 1.07999 * 125.79605 * 180.02562 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7069 1.3463 0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8882 2.3964 1.2126 7 6 2.0078 -1.2037 -0.0005 8 1 3.0878 -1.2038 -0.0010 9 7 1.3208 -2.3936 -0.0016 10 6 1.8726 -3.6397 -0.0027 11 6 0.8591 -4.5352 -0.0029 12 6 1.0024 -6.0354 -0.0046 13 6 0.3321 -6.6104 -1.2540 14 6 0.4781 -8.1333 -1.2561 15 6 -0.1901 -8.7114 -0.0070 16 6 0.4802 -8.1365 1.2424 17 6 0.3337 -6.6130 1.2444 18 6 -0.3476 -3.8229 -0.0025 19 7 -0.0722 -2.5429 -0.0015 20 1 -0.4850 0.8401 0.0004 21 1 2.9276 -3.8703 0.0009 22 1 2.0600 -6.2993 -0.0061 23 1 -0.7255 -6.3464 -1.2531 24 1 0.8084 -6.1988 -2.1439 25 1 1.5358 -8.3970 -1.2573 26 1 0.0003 -8.5430 -2.1460 27 1 -0.0865 -9.7965 -0.0087 28 1 -1.2478 -8.4478 -0.0058 29 1 1.5378 -8.4000 1.2412 30 1 0.0038 -8.5480 2.1322 31 1 0.8113 -6.2034 2.1345 32 1 -0.7238 -6.3491 1.2454 33 1 -1.3369 -4.2562 -0.0022 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261152108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:25 Heat of formation + Delta-G solvation = 29.339903 kcal Electronic energy + Delta-G solvation = -14744.101831 eV Core-core repulsion = 12383.457996 eV Total energy + Delta-G solvation = -2360.643835 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.45069 -38.99748 -35.44967 -33.00127 -31.88601 -31.47285 -29.10362 -26.70090 -23.33312 -23.24378 -22.50243 -20.63657 -20.45707 -18.79146 -17.41378 -16.32697 -15.77726 -15.22622 -15.00028 -14.83126 -14.81807 -14.74767 -13.61402 -13.27414 -13.25451 -13.02378 -12.91512 -12.84168 -12.55865 -12.04919 -11.90992 -11.87895 -11.31699 -11.28446 -10.87859 -10.84999 -10.47286 -10.04202 -8.92871 -8.45501 -6.24980 1.30674 1.37574 1.55772 1.81680 2.13719 2.42095 2.92621 3.09951 3.91979 4.06551 4.10020 4.40922 4.45227 4.55764 4.64279 4.73802 4.77621 4.86592 4.90513 4.96233 5.01272 5.16248 5.27185 5.29573 5.38111 5.40383 5.44777 5.56233 5.66494 5.69292 5.91972 6.00460 6.39794 6.82155 7.53977 7.76487 8.54919 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.073171 B = 0.006033 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.571787 B = 4640.106376 C = 4681.895840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C -0.005 4.005 3 Si 1.015 2.985 4 H -0.246 1.246 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.364 4.364 8 H 0.130 0.870 9 N -0.184 5.184 10 C -0.068 4.068 11 C -0.251 4.251 12 C 0.012 3.988 13 C -0.104 4.104 14 C -0.113 4.113 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.104 4.104 18 C -0.053 4.053 19 N -0.317 5.317 20 H 0.274 0.726 21 H 0.165 0.835 22 H 0.065 0.935 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.859 -12.063 -0.009 12.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.215 4.215 3 Si 0.835 3.165 4 H -0.169 1.169 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.495 4.495 8 H 0.147 0.853 9 N 0.047 4.953 10 C -0.216 4.216 11 C -0.265 4.265 12 C -0.008 4.008 13 C -0.141 4.141 14 C -0.151 4.151 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.141 4.141 18 C -0.228 4.228 19 N -0.147 5.147 20 H 0.084 0.916 21 H 0.182 0.818 22 H 0.084 0.916 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.200 -10.696 -0.008 10.920 hybrid contribution 0.353 0.288 0.000 0.455 sum 2.553 -10.408 -0.008 10.716 Atomic orbital electron populations 1.70389 1.08236 1.28711 1.38500 1.26778 0.96492 1.04045 0.94219 0.84593 0.78880 0.74740 0.78324 1.16864 1.19593 1.19598 1.20532 0.92639 0.81595 1.54721 0.85280 1.45083 1.03641 1.04895 1.41634 1.22508 0.99416 0.84903 1.14786 1.19823 0.91016 0.96180 1.19453 1.19230 0.99065 0.87499 0.94999 1.21501 0.99935 0.95887 0.96820 1.21532 1.01238 0.93962 0.98352 1.21530 0.99492 1.00211 0.94094 1.21539 1.01231 0.93965 0.98347 1.21510 0.99937 0.95876 0.96818 1.23683 0.98883 0.91717 1.08558 1.78032 0.91987 1.17580 1.27075 0.91601 0.81796 0.91633 0.93271 0.93759 0.91557 0.91325 0.90472 0.92489 0.91553 0.91326 0.93750 0.93263 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.92 11.82 21.66 0.26 -48.67 16 2 C 0.00 -0.26 5.50 84.95 0.47 0.21 16 3 Si 1.02 40.23 29.55 68.60 2.03 42.26 16 4 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 6 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.36 -20.34 10.26 84.00 0.86 -19.48 16 8 H 0.13 6.45 7.83 -2.91 -0.02 6.43 16 9 N -0.18 -10.59 3.74 -190.43 -0.71 -11.30 16 10 C -0.07 -3.34 11.35 83.31 0.95 -2.39 16 11 C -0.25 -11.28 4.80 -20.10 -0.10 -11.38 16 12 C 0.01 0.40 2.55 -11.54 -0.03 0.37 16 13 C -0.10 -3.12 5.09 30.59 0.16 -2.97 16 14 C -0.11 -2.54 5.92 30.59 0.18 -2.36 16 15 C -0.12 -2.36 5.92 30.60 0.18 -2.18 16 16 C -0.11 -2.54 5.92 30.61 0.18 -2.36 16 17 C -0.10 -3.12 5.10 30.61 0.16 -2.96 16 18 C -0.05 -2.67 11.45 85.28 0.98 -1.70 16 19 N -0.32 -18.92 10.42 -56.80 -0.59 -19.51 16 20 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 21 H 0.16 6.93 8.06 -2.91 -0.02 6.91 16 22 H 0.07 2.10 8.11 -2.39 -0.02 2.08 16 23 H 0.05 1.56 8.02 -2.38 -0.02 1.54 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.20 8.14 -2.38 -0.02 1.19 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.05 1.56 8.02 -2.39 -0.02 1.54 16 33 H 0.16 7.27 8.06 -2.91 -0.02 7.25 16 Total: -1.00 -67.67 272.25 6.03 -61.64 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 1.07 Total: 22.77 kcal Atomic # 6 Polarization: -51.18 SS G_CDS: 3.98 Total: -47.20 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.05 Total: -79.48 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -67.67 6.03 -61.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.982 kcal (2) G-P(sol) polarization free energy of solvation -67.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds