Wall clock time and date at job start Mon Mar 30 2020 20:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34511 * 125.79149 * 2 1 4 4 C 1.41387 * 106.83883 * 180.11614 * 3 2 1 5 5 C 1.34510 * 106.84260 * 359.57001 * 4 3 2 6 6 C 1.50699 * 125.78874 * 180.23061 * 5 4 3 7 7 C 1.50709 * 110.01589 * 297.07607 * 6 5 4 8 8 H 1.07992 * 119.99676 * 120.01198 * 7 6 5 9 9 C 1.37880 * 119.99614 * 300.01406 * 7 6 5 10 10 N 1.31506 * 120.00225 * 6.47619 * 9 7 6 11 11 Si 1.86802 * 119.99435 * 186.47528 * 9 7 6 12 12 H 1.48493 * 109.47229 * 90.00120 * 11 9 7 13 13 H 1.48505 * 109.47029 * 210.00145 * 11 9 7 14 14 H 1.48504 * 109.47005 * 329.99951 * 11 9 7 15 15 C 1.54264 * 110.03296 * 175.63968 * 6 5 4 16 16 C 1.54889 * 104.19507 * 217.10215 * 15 6 5 17 17 C 1.54893 * 102.74903 * 37.94074 * 16 15 6 18 18 C 1.53872 * 110.03378 * 58.46932 * 6 5 4 19 19 O 1.34300 * 108.41894 * 0.26270 * 5 4 3 20 20 H 1.08994 * 109.47325 * 270.36940 * 1 2 3 21 21 H 1.09000 * 109.47029 * 30.36887 * 1 2 3 22 22 H 1.09004 * 109.46951 * 150.36942 * 1 2 3 23 23 H 1.08002 * 126.58284 * 359.95167 * 3 2 1 24 24 H 1.08001 * 126.57427 * 179.83185 * 4 3 2 25 25 H 0.97008 * 119.99859 * 180.02562 * 10 9 7 26 26 H 1.09006 * 110.48511 * 335.77656 * 15 6 5 27 27 H 1.08999 * 110.49281 * 98.42390 * 15 6 5 28 28 H 1.08991 * 110.75743 * 279.62576 * 16 15 6 29 29 H 1.09008 * 110.75458 * 156.25162 * 16 15 6 30 30 H 1.08998 * 110.48767 * 203.37931 * 17 16 15 31 31 H 1.09001 * 110.48792 * 80.73312 * 17 16 15 32 32 H 1.09005 * 110.02722 * 238.56804 * 18 6 5 33 33 H 1.08997 * 110.03104 * 359.94856 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 -0.0027 5 6 3.5814 -0.7123 0.0054 6 6 4.7706 -1.6379 0.0109 7 6 5.5735 -1.4538 -1.2511 8 1 6.6062 -1.1432 -1.1935 9 6 4.9894 -1.6819 -2.4791 10 7 3.7014 -1.9354 -2.5578 11 14 6.0279 -1.6308 -4.0310 12 1 6.5646 -2.9865 -4.3124 13 1 5.1902 -1.1833 -5.1727 14 1 7.1544 -0.6819 -3.8418 15 6 4.2999 -3.1022 0.1300 16 6 5.3655 -3.7714 1.0332 17 6 5.6847 -2.6615 2.0653 18 6 5.6510 -1.3577 1.2414 19 8 2.2924 -1.0894 0.0071 20 1 -0.3633 0.0066 1.0276 21 1 -0.3633 0.8867 -0.5196 22 1 -0.3633 -0.8933 -0.5081 23 1 1.9666 2.1204 -0.0007 24 1 4.5212 1.2432 -0.0060 25 1 3.2906 -2.0962 -3.4217 26 1 3.3174 -3.1501 0.5997 27 1 4.2785 -3.5771 -0.8508 28 1 6.2536 -4.0295 0.4565 29 1 4.9551 -4.6520 1.5274 30 1 6.6738 -2.8147 2.4968 31 1 4.9258 -2.6381 2.8474 32 1 6.6592 -1.0894 0.9257 33 1 5.2186 -0.5516 1.8341 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261160916.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:33 Heat of formation + Delta-G solvation = -21.711470 kcal Electronic energy + Delta-G solvation = -15535.253727 eV Core-core repulsion = 13140.103387 eV Total energy + Delta-G solvation = -2395.150340 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.03213 -38.96574 -34.54952 -33.66796 -32.59972 -30.18491 -29.23580 -26.82718 -25.50457 -22.46628 -21.54749 -20.94425 -20.21396 -18.52021 -17.02988 -16.87744 -16.36452 -15.82994 -15.37607 -14.49659 -14.11630 -13.97098 -13.83039 -13.60257 -13.39208 -13.29289 -12.88574 -12.56825 -12.46293 -12.26914 -11.83973 -11.63917 -11.51179 -11.36230 -11.14805 -11.00506 -10.47026 -10.33878 -8.68250 -8.03442 -6.23078 1.31906 1.40860 1.42698 1.49749 2.13431 2.43082 2.56481 3.23650 4.09090 4.11617 4.16976 4.28719 4.49244 4.55566 4.70464 4.79263 4.81970 4.96012 4.98441 5.00560 5.12139 5.19796 5.24567 5.29734 5.35625 5.41971 5.60409 5.66344 5.70030 5.88730 5.94510 6.13348 6.33225 6.82287 6.87024 7.44292 8.93461 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.014510 C = 0.010331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.281271 B = 1929.233348 C = 2709.657934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.075 4.075 3 C -0.221 4.221 4 C -0.279 4.279 5 C 0.085 3.915 6 C 0.122 3.878 7 C -0.518 4.518 8 H 0.061 0.939 9 C 0.025 3.975 10 N -0.890 5.890 11 Si 0.946 3.054 12 H -0.273 1.273 13 H -0.292 1.292 14 H -0.268 1.268 15 C -0.096 4.096 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.106 4.106 19 O -0.186 6.186 20 H 0.091 0.909 21 H 0.098 0.902 22 H 0.066 0.934 23 H 0.155 0.845 24 H 0.127 0.873 25 H 0.257 0.743 26 H 0.027 0.973 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 0.988 6.266 6.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.124 4.124 3 C -0.241 4.241 4 C -0.298 4.298 5 C 0.033 3.967 6 C 0.122 3.878 7 C -0.555 4.555 8 H 0.079 0.921 9 C -0.177 4.177 10 N -0.526 5.526 11 Si 0.772 3.228 12 H -0.199 1.199 13 H -0.218 1.218 14 H -0.193 1.193 15 C -0.134 4.134 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.144 4.144 19 O -0.083 6.083 20 H 0.110 0.890 21 H 0.117 0.883 22 H 0.085 0.915 23 H 0.172 0.828 24 H 0.145 0.855 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.995 0.662 6.134 6.485 hybrid contribution 0.415 0.423 -1.427 1.545 sum -1.580 1.085 4.708 5.083 Atomic orbital electron populations 1.20245 0.83297 1.03918 1.03848 1.22993 0.95545 0.84631 1.09280 1.21601 0.92695 0.99417 1.10342 1.21308 0.97594 0.94695 1.16195 1.23553 0.82353 0.94971 0.95820 1.17698 0.86180 0.89665 0.94280 1.21326 0.96965 1.46903 0.90305 0.92062 1.25676 0.95637 0.94668 1.01728 1.70131 1.10622 1.46942 1.24940 0.85734 0.78949 0.78531 0.79537 1.19860 1.21795 1.19271 1.22175 0.96010 0.96994 0.98206 1.22432 0.98528 0.97542 0.96770 1.22296 1.01699 0.93957 0.96982 1.22256 0.99242 0.97767 0.95101 1.83968 1.17606 1.35567 1.71130 0.89036 0.88343 0.91529 0.82771 0.85521 0.93421 0.95432 0.93925 0.92001 0.91115 0.90016 0.91772 0.91929 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.42 71.24 0.74 -0.96 16 2 C -0.08 -3.22 7.32 24.83 0.18 -3.04 16 3 C -0.22 -9.47 10.81 22.19 0.24 -9.23 16 4 C -0.28 -13.50 10.17 22.19 0.23 -13.27 16 5 C 0.08 4.33 4.16 24.83 0.10 4.43 16 6 C 0.12 6.01 0.52 -52.95 -0.03 5.98 16 7 C -0.52 -27.67 7.87 25.60 0.20 -27.47 16 8 H 0.06 3.22 7.33 -2.91 -0.02 3.20 16 9 C 0.02 1.35 4.84 84.66 0.41 1.76 16 10 N -0.89 -51.25 11.12 21.45 0.24 -51.01 16 11 Si 0.95 43.60 29.54 68.60 2.03 45.62 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 C -0.10 -4.54 5.36 31.67 0.17 -4.37 16 16 C -0.12 -4.31 6.91 31.89 0.22 -4.09 16 17 C -0.11 -3.80 6.83 31.67 0.22 -3.58 16 18 C -0.11 -4.34 5.99 31.32 0.19 -4.15 16 19 O -0.19 -9.47 9.54 -2.50 -0.02 -9.49 16 20 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 21 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 22 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 23 H 0.15 5.43 8.06 -2.91 -0.02 5.41 16 24 H 0.13 5.93 8.06 -2.91 -0.02 5.91 16 25 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 26 H 0.03 1.32 7.16 -2.38 -0.02 1.30 16 27 H 0.04 2.27 6.64 -2.39 -0.02 2.25 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 29 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.51 7.37 -2.38 -0.02 2.49 16 33 H 0.05 1.97 7.39 -2.39 -0.02 1.95 16 Total: -1.00 -63.07 270.02 6.19 -56.88 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 1.08 Total: 16.00 kcal Atomic # 6 Polarization: -60.87 SS G_CDS: 2.87 Total: -58.00 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.24 Total: -51.01 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.02 Total: -9.49 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -63.07 6.19 -56.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160916.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.166 kcal (2) G-P(sol) polarization free energy of solvation -63.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds