Wall clock time and date at job start Mon Mar 30 2020 20:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99770 * 269.72826 * 4 3 2 6 6 C 1.38239 * 119.99901 * 179.76875 * 5 4 3 7 7 C 1.38240 * 119.99645 * 0.50240 * 6 5 4 8 8 C 1.50698 * 119.99659 * 179.72727 * 7 6 5 9 9 H 1.09003 * 109.47112 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47243 * 300.02211 * 8 7 6 11 11 C 1.50701 * 109.47227 * 60.02410 * 8 7 6 12 12 H 1.07998 * 119.99816 * 0.02562 * 11 8 7 13 13 C 1.37883 * 119.99874 * 179.97438 * 11 8 7 14 14 N 1.31511 * 119.99844 * 359.97438 * 13 11 8 15 15 Si 1.86795 * 119.99904 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.47418 * 89.99859 * 15 13 11 17 17 H 1.48501 * 109.47434 * 209.99892 * 15 13 11 18 18 H 1.48507 * 109.47170 * 329.99709 * 15 13 11 19 19 C 1.38227 * 120.00205 * 359.74956 * 7 6 5 20 20 C 1.38232 * 119.99860 * 90.00268 * 4 3 2 21 21 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 22 22 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 24 24 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 25 25 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 26 26 H 1.08001 * 120.00330 * 359.97438 * 5 4 3 27 27 H 1.08001 * 119.99843 * 180.23314 * 6 5 4 28 28 H 1.09000 * 109.47333 * 180.02562 * 10 8 7 29 29 H 1.08997 * 109.47497 * 300.00215 * 10 8 7 30 30 H 1.09003 * 109.47008 * 60.00008 * 10 8 7 31 31 H 0.97000 * 119.99644 * 180.02562 * 14 13 11 32 32 H 1.07996 * 120.00251 * 179.97438 * 19 7 6 33 33 H 1.07998 * 120.00407 * 0.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2025 1.1372 1.1962 6 6 5.5802 1.0232 1.1957 7 6 6.2687 0.9689 -0.0018 8 6 7.7711 0.8508 -0.0024 9 1 8.1329 0.8226 -1.0302 10 6 8.3777 2.0560 0.7189 11 6 8.1757 -0.4154 0.7076 12 1 7.4205 -1.0694 1.1178 13 6 9.5101 -0.7394 0.8325 14 7 10.4296 0.0563 0.3317 15 14 10.0117 -2.3092 1.7119 16 1 10.0888 -3.4225 0.7322 17 1 11.3394 -2.1174 2.3487 18 1 9.0055 -2.6359 2.7542 19 6 5.5792 1.0233 -1.1986 20 6 4.2011 1.1321 -1.1981 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6886 1.8464 -0.8900 25 1 1.6887 1.8463 0.8900 26 1 3.6650 1.1846 2.1318 27 1 6.1189 0.9811 2.1308 28 1 9.4643 1.9709 0.7181 29 1 8.0850 2.9719 0.2054 30 1 8.0158 2.0843 1.7467 31 1 11.3683 -0.1719 0.4193 32 1 6.1172 0.9812 -2.1341 33 1 3.6625 1.1754 -2.1332 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261208222.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:48 Heat of formation + Delta-G solvation = -51.879093 kcal Electronic energy + Delta-G solvation = -14372.105341 eV Core-core repulsion = 11975.646835 eV Total energy + Delta-G solvation = -2396.458506 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42178 -38.57341 -36.27377 -33.61438 -31.74007 -31.01234 -27.80840 -27.21098 -26.06962 -23.64043 -23.04932 -21.13809 -18.31855 -17.49334 -17.21710 -16.80939 -16.67825 -15.84965 -15.54138 -15.10144 -14.61742 -14.24451 -13.87592 -13.71692 -13.31274 -13.06458 -12.85505 -12.70913 -12.52336 -12.29515 -12.19564 -12.00599 -11.73593 -11.18480 -11.01059 -10.58747 -10.47696 -9.69143 -9.31340 -8.10546 -6.24505 0.52588 0.63298 1.40861 1.41655 1.52226 2.42201 2.79046 3.16783 3.35003 3.99713 4.01592 4.23772 4.36040 4.39946 4.47394 4.59864 4.60752 4.76549 4.84691 4.88286 4.89479 5.00845 5.16798 5.29878 5.32157 5.52990 5.64420 5.70350 5.73262 6.04587 6.11040 6.24406 6.30498 6.37930 6.83717 7.43225 8.93998 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.040760 B = 0.006341 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.781646 B = 4414.895600 C = 4766.524309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.417 6.417 3 C 0.112 3.888 4 C -0.124 4.124 5 C -0.102 4.102 6 C -0.129 4.129 7 C -0.053 4.053 8 C 0.068 3.932 9 H 0.005 0.995 10 C -0.120 4.120 11 C -0.522 4.522 12 H 0.048 0.952 13 C 0.015 3.985 14 N -0.916 5.916 15 Si 0.954 3.046 16 H -0.277 1.277 17 H -0.280 1.280 18 H -0.270 1.270 19 C -0.148 4.148 20 C -0.098 4.098 21 H 0.054 0.946 22 H 0.092 0.908 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.137 0.863 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.025 0.975 30 H 0.032 0.968 31 H 0.262 0.738 32 H 0.117 0.883 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.633 3.149 -0.264 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.337 6.337 3 C 0.037 3.963 4 C -0.124 4.124 5 C -0.120 4.120 6 C -0.147 4.147 7 C -0.053 4.053 8 C 0.049 3.951 9 H 0.023 0.977 10 C -0.178 4.178 11 C -0.560 4.560 12 H 0.066 0.934 13 C -0.184 4.184 14 N -0.556 5.556 15 Si 0.780 3.220 16 H -0.203 1.203 17 H -0.205 1.205 18 H -0.195 1.195 19 C -0.166 4.166 20 C -0.116 4.116 21 H 0.073 0.927 22 H 0.110 0.890 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.155 0.845 27 H 0.130 0.870 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.339 3.007 -0.279 16.616 hybrid contribution 0.720 -0.624 0.329 1.008 sum -15.619 2.383 0.051 15.800 Atomic orbital electron populations 1.22943 0.79385 1.03687 1.01141 1.87968 1.21545 1.28599 1.95626 1.21329 0.88209 0.84689 1.02118 1.19747 0.95203 1.04214 0.93201 1.21205 0.93426 0.98989 0.98390 1.21036 0.94381 1.01512 0.97779 1.20519 0.97064 0.94059 0.93616 1.17790 0.87186 0.94554 0.95530 0.97720 1.21611 1.02503 0.95560 0.98116 1.21367 0.91937 1.06321 1.36371 0.93352 1.25710 0.96593 0.99770 0.96313 1.70007 1.00773 1.38221 1.46590 0.85609 0.77620 0.79922 0.78851 1.20271 1.20508 1.19454 1.21219 0.94905 1.02967 0.97540 1.21170 0.93313 0.98753 0.98352 0.92744 0.88985 0.92837 0.90854 0.91028 0.84475 0.87012 0.92158 0.95622 0.94907 0.92852 0.86455 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -10.96 10.69 -148.98 -1.59 -12.55 16 3 C 0.11 2.64 6.06 71.24 0.43 3.08 16 4 C -0.12 -3.87 5.51 -19.87 -0.11 -3.98 16 5 C -0.10 -3.46 9.70 22.27 0.22 -3.25 16 6 C -0.13 -5.29 8.71 22.27 0.19 -5.10 16 7 C -0.05 -2.37 4.74 -19.87 -0.09 -2.46 16 8 C 0.07 3.55 2.48 -12.29 -0.03 3.52 16 9 H 0.00 0.26 7.88 -2.39 -0.02 0.25 16 10 C -0.12 -5.99 8.78 71.98 0.63 -5.36 16 11 C -0.52 -29.54 8.24 25.60 0.21 -29.33 16 12 H 0.05 2.75 7.60 -2.91 -0.02 2.73 16 13 C 0.01 0.83 5.30 84.66 0.45 1.28 16 14 N -0.92 -53.38 11.32 21.45 0.24 -53.14 16 15 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 C -0.15 -5.87 9.67 22.27 0.22 -5.65 16 20 C -0.10 -3.22 9.70 22.27 0.22 -3.00 16 21 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 25 H 0.07 1.40 8.08 -2.39 -0.02 1.38 16 26 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 27 H 0.11 4.70 7.58 -2.91 -0.02 4.68 16 28 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 29 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.03 1.55 7.39 -2.39 -0.02 1.53 16 31 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.12 4.47 7.95 -2.91 -0.02 4.44 16 33 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -63.89 280.40 5.33 -58.56 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.07 Total: 9.30 kcal Atomic # 6 Polarization: -52.18 SS G_CDS: 3.58 Total: -48.60 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.24 Total: -53.14 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.59 Total: -12.55 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -63.89 5.33 -58.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261208222.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.685 kcal (2) G-P(sol) polarization free energy of solvation -63.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds