Wall clock time and date at job start Mon Mar 30 2020 20:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47230 * 2 1 4 4 O 1.42901 * 109.47295 * 120.00942 * 2 1 3 5 5 C 1.42902 * 113.99857 * 149.99897 * 4 2 1 6 6 C 1.50699 * 109.46874 * 179.97438 * 5 4 2 7 7 C 1.38639 * 119.75171 * 269.72498 * 6 5 4 8 8 C 1.37620 * 120.24385 * 179.72082 * 7 6 5 9 9 C 1.40714 * 119.74800 * 0.57454 * 8 7 6 10 10 C 1.41393 * 120.24509 * 179.67960 * 9 8 7 11 11 H 1.07996 * 119.99963 * 204.41017 * 10 9 8 12 12 C 1.39951 * 119.99977 * 24.40927 * 10 9 8 13 13 N 1.30824 * 119.99980 * 17.84393 * 12 10 9 14 14 Si 1.86798 * 120.00153 * 197.84648 * 12 10 9 15 15 H 1.48502 * 109.46823 * 59.99952 * 14 12 10 16 16 H 1.48499 * 109.47252 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46961 * 300.00183 * 14 12 10 18 18 C 1.40720 * 119.50963 * 359.70030 * 9 8 7 19 19 C 1.37615 * 119.74755 * 0.02562 * 18 9 8 20 20 H 1.09001 * 109.46674 * 299.99133 * 1 2 3 21 21 H 1.08991 * 109.47546 * 59.99573 * 1 2 3 22 22 H 1.09007 * 109.47366 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46674 * 240.00867 * 2 1 3 24 24 H 1.09001 * 109.46585 * 60.00812 * 3 2 1 25 25 H 1.09003 * 109.47225 * 180.02562 * 3 2 1 26 26 H 1.08991 * 109.47205 * 300.00636 * 3 2 1 27 27 H 1.09003 * 109.47230 * 299.99711 * 5 4 2 28 28 H 1.09009 * 109.47167 * 59.99769 * 5 4 2 29 29 H 1.07999 * 119.87158 * 359.97438 * 7 6 5 30 30 H 1.07998 * 120.12269 * 180.28458 * 8 7 6 31 31 H 0.96993 * 120.00420 * 179.97438 * 13 12 10 32 32 H 1.08001 * 120.12206 * 179.97438 * 18 9 8 33 33 H 1.07994 * 119.87631 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 3.2660 -1.3246 0.9883 6 6 3.6699 -1.9981 2.2745 7 6 4.4266 -1.3044 3.2063 8 6 4.7962 -1.9076 4.3867 9 6 4.4135 -3.2377 4.6408 10 6 4.7933 -3.8700 5.8471 11 1 4.8615 -4.9467 5.8941 12 6 5.0808 -3.1004 6.9801 13 7 4.6755 -1.8584 7.0474 14 14 6.0434 -3.8466 8.3964 15 1 7.3773 -4.2843 7.9120 16 1 6.2147 -2.8323 9.4674 17 1 5.3042 -5.0164 8.9353 18 6 3.6504 -3.9340 3.6853 19 6 3.2872 -3.3089 2.5142 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5138 -0.8898 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8932 -0.5137 -0.8901 24 1 1.6767 1.9562 0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8898 27 1 3.1809 -2.0708 0.1982 28 1 4.0200 -0.5874 0.7122 29 1 4.7236 -0.2854 3.0067 30 1 5.3818 -1.3638 5.1131 31 1 4.8744 -1.3251 7.8327 32 1 3.3516 -4.9553 3.8699 33 1 2.7020 -3.8415 1.7793 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261216080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:02 Heat of formation + Delta-G solvation = -62.464624 kcal Electronic energy + Delta-G solvation = -14305.328112 eV Core-core repulsion = 11908.410582 eV Total energy + Delta-G solvation = -2396.917530 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.83145 -38.73475 -35.73251 -33.76210 -31.95266 -31.17396 -28.54838 -28.01037 -25.26695 -22.91599 -22.12316 -21.81102 -19.24611 -17.69820 -17.21338 -16.54862 -16.26260 -15.71975 -15.24498 -14.94032 -14.35418 -13.99034 -13.83362 -13.61889 -13.43741 -13.07271 -12.93953 -12.81817 -12.65235 -12.44673 -12.23937 -12.00358 -11.56843 -11.41436 -11.27817 -11.02975 -10.38950 -9.40207 -9.28546 -8.65960 -6.37202 0.87985 1.12617 1.37765 1.49116 1.52545 2.20099 2.60650 3.13402 3.77417 4.01412 4.15550 4.29876 4.30923 4.35931 4.54771 4.57909 4.63528 4.77120 4.92169 4.95552 4.97264 5.02243 5.13889 5.30889 5.34329 5.37046 5.44002 5.68232 5.92372 6.07542 6.20972 6.35375 6.52461 6.67154 6.91007 7.00808 8.31106 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.055876 B = 0.005674 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.989994 B = 4933.403131 C = 5130.054188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 C -0.171 4.171 4 O -0.407 6.407 5 C 0.133 3.867 6 C -0.221 4.221 7 C -0.088 4.088 8 C -0.195 4.195 9 C 0.082 3.918 10 C -0.500 4.500 11 H 0.078 0.922 12 C 0.034 3.966 13 N -0.825 5.825 14 Si 0.986 3.014 15 H -0.259 1.259 16 H -0.267 1.267 17 H -0.258 1.258 18 C -0.247 4.247 19 C -0.074 4.074 20 H 0.051 0.949 21 H 0.094 0.906 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.289 0.711 32 H 0.100 0.900 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.731 3.553 -9.597 10.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 C -0.228 4.228 4 O -0.328 6.328 5 C 0.058 3.942 6 C -0.222 4.222 7 C -0.106 4.106 8 C -0.214 4.214 9 C 0.080 3.920 10 C -0.529 4.529 11 H 0.096 0.904 12 C -0.181 4.181 13 N -0.450 5.450 14 Si 0.806 3.194 15 H -0.183 1.183 16 H -0.191 1.191 17 H -0.182 1.182 18 C -0.266 4.266 19 C -0.092 4.092 20 H 0.070 0.930 21 H 0.112 0.888 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.853 3.766 -9.279 10.412 hybrid contribution 0.485 -0.184 0.700 0.871 sum -2.367 3.582 -8.579 9.593 Atomic orbital electron populations 1.21866 0.92983 1.02492 1.02950 1.22346 0.95764 0.92957 0.88187 1.22272 1.01249 0.96420 1.02860 1.88081 1.37413 1.70303 1.37014 1.21043 0.84854 0.94310 0.93992 1.19294 1.08659 0.95303 0.98988 1.20787 0.98140 0.97905 0.93767 1.21281 1.05787 0.97232 0.97122 1.18020 0.88677 0.92548 0.92775 1.19873 1.42615 0.95054 0.95374 0.90355 1.26839 0.93970 0.94829 1.02457 1.69886 1.34847 1.10004 1.30307 0.85202 0.79121 0.78976 0.76097 1.18331 1.19107 1.18222 1.21190 1.07086 1.00588 0.97759 1.20723 0.97757 0.94493 0.96212 0.93021 0.88765 0.92636 0.91198 0.93098 0.93055 0.89357 0.92347 0.93062 0.87841 0.87986 0.90008 0.88177 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.56 71.98 0.69 -2.55 16 2 C 0.06 1.68 3.34 30.59 0.10 1.78 16 3 C -0.17 -3.89 9.53 71.98 0.69 -3.20 16 4 O -0.41 -14.90 9.97 -148.98 -1.49 -16.39 16 5 C 0.13 4.80 5.86 71.24 0.42 5.21 16 6 C -0.22 -10.03 5.53 -19.67 -0.11 -10.14 16 7 C -0.09 -4.31 9.67 22.22 0.21 -4.09 16 8 C -0.19 -10.77 8.70 22.73 0.20 -10.57 16 9 C 0.08 4.64 5.57 -21.29 -0.12 4.52 16 10 C -0.50 -27.79 9.05 23.46 0.21 -27.58 16 11 H 0.08 4.16 7.91 -2.91 -0.02 4.13 16 12 C 0.03 1.76 5.14 85.26 0.44 2.20 16 13 N -0.82 -44.52 10.95 21.83 0.24 -44.28 16 14 Si 0.99 38.73 29.60 68.60 2.03 40.76 16 15 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 16 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 17 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 18 C -0.25 -12.70 9.80 22.73 0.22 -12.47 16 19 C -0.07 -3.41 9.67 22.22 0.21 -3.19 16 20 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.07 1.57 7.79 -2.39 -0.02 1.55 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.20 7.87 -2.39 -0.02 1.18 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 1.84 8.02 -2.39 -0.02 1.82 16 28 H 0.05 1.68 7.81 -2.38 -0.02 1.66 16 29 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 30 H 0.10 5.85 6.16 -2.91 -0.02 5.83 16 31 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 32 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 33 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -62.34 282.00 5.02 -57.33 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 1.07 Total: 22.66 kcal Atomic # 6 Polarization: -63.24 SS G_CDS: 3.17 Total: -60.07 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.24 Total: -44.28 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -1.49 Total: -16.39 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -62.34 5.02 -57.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.139 kcal (2) G-P(sol) polarization free energy of solvation -62.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds