Wall clock time and date at job start Mon Mar 30 2020 20:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47285 * 2 1 4 4 C 1.38165 * 120.02755 * 264.97569 * 3 2 1 5 5 C 1.38248 * 120.05352 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.11188 * 359.97438 * 5 4 3 7 7 C 1.38119 * 120.05462 * 0.03793 * 6 5 4 8 8 C 1.50701 * 120.02625 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47121 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46777 * 299.95474 * 8 7 6 11 11 C 1.50704 * 109.47434 * 59.95110 * 8 7 6 12 12 H 1.07998 * 119.99698 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00268 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00176 * 180.02562 * 13 11 8 15 15 Si 1.86806 * 119.99939 * 0.02562 * 13 11 8 16 16 H 1.48498 * 109.46850 * 89.99919 * 15 13 11 17 17 H 1.48496 * 109.47043 * 209.99888 * 15 13 11 18 18 H 1.48496 * 109.47085 * 330.00118 * 15 13 11 19 19 C 1.38715 * 120.02821 * 84.99740 * 3 2 1 20 20 O 1.35903 * 120.05514 * 359.70783 * 19 3 2 21 21 H 1.09004 * 109.47077 * 60.00094 * 1 2 3 22 22 H 1.09000 * 109.47274 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47241 * 300.00199 * 1 2 3 24 24 H 1.08997 * 109.47462 * 239.99808 * 2 1 3 25 25 H 1.09004 * 109.47077 * 119.99906 * 2 1 3 26 26 H 1.07993 * 119.97434 * 0.04483 * 4 3 2 27 27 H 1.08000 * 119.94403 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.96956 * 180.02562 * 6 5 4 29 29 H 1.09008 * 109.47054 * 179.97438 * 10 8 7 30 30 H 1.08995 * 109.47151 * 299.99829 * 10 8 7 31 31 H 1.09000 * 109.47368 * 60.00061 * 10 8 7 32 32 H 0.97003 * 119.99821 * 179.97438 * 14 13 11 33 33 H 0.96696 * 114.00399 * 89.99404 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0377 -1.1916 5 6 2.8230 3.3409 -1.1922 6 6 2.9557 4.0304 -0.0008 7 6 2.6281 3.4180 1.1931 8 6 2.7724 4.1702 2.4909 9 1 2.4684 3.5290 3.3183 10 6 4.2325 4.5870 2.6791 11 6 1.8996 5.3984 2.4596 12 1 1.2999 5.6125 1.5873 13 6 1.8657 6.2479 3.5449 14 7 1.1036 7.3194 3.5178 15 14 2.9023 5.8772 5.0540 16 1 4.2344 6.5172 4.9089 17 1 2.2254 6.4114 6.2630 18 1 3.0712 4.4081 5.1898 19 6 2.1650 2.1101 1.1964 20 8 1.8366 1.5074 2.3693 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.2581 1.5016 -2.1233 27 1 3.0802 3.8213 -2.1246 28 1 3.3160 5.0486 -0.0040 29 1 4.3369 5.1315 3.6176 30 1 4.8639 3.6989 2.7018 31 1 4.5369 5.2282 1.8518 32 1 1.0795 7.9169 4.2815 33 1 2.5696 1.0359 2.7880 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:10 Heat of formation + Delta-G solvation = -33.485052 kcal Electronic energy + Delta-G solvation = -14987.671076 eV Core-core repulsion = 12592.010195 eV Total energy + Delta-G solvation = -2395.660881 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.59891 -36.08161 -35.11318 -33.09085 -31.42616 -28.55179 -28.45201 -25.05036 -23.68093 -22.58080 -21.02211 -19.12650 -17.79260 -16.57250 -15.52205 -15.35546 -14.79865 -14.47743 -13.55534 -13.42427 -13.14723 -12.78704 -12.66728 -12.21986 -11.75612 -11.70451 -11.65719 -11.18017 -10.99945 -10.85303 -10.70787 -10.46643 -9.99133 -9.75374 -9.26114 -9.10686 -8.55565 -8.02847 -7.83062 -6.05620 -4.04548 1.82301 1.96758 3.27301 3.38263 3.40845 4.22097 4.41913 4.77415 5.07315 5.17570 5.28006 5.50286 5.59750 5.63088 5.77516 5.88774 5.97373 6.12391 6.18013 6.31479 6.35167 6.42457 6.48351 6.66263 6.73044 6.89470 6.95694 7.05844 7.16702 7.45516 7.60543 7.74910 8.22130 8.53414 8.98487 9.55421 11.07456 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.035929 B = 0.008829 C = 0.008273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.118114 B = 3170.575415 C = 3383.712153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.116 4.116 4 C -0.129 4.129 5 C -0.131 4.131 6 C -0.099 4.099 7 C -0.048 4.048 8 C 0.038 3.962 9 H 0.044 0.956 10 C -0.144 4.144 11 C -0.504 4.504 12 H 0.075 0.925 13 C 0.069 3.931 14 N -0.900 5.900 15 Si 0.889 3.111 16 H -0.280 1.280 17 H -0.298 1.298 18 H -0.266 1.266 19 C 0.093 3.907 20 O -0.488 6.488 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.041 0.959 30 H 0.028 0.972 31 H 0.053 0.947 32 H 0.264 0.736 33 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 -12.445 -6.152 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.116 4.116 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.117 4.117 7 C -0.048 4.048 8 C 0.020 3.980 9 H 0.062 0.938 10 C -0.201 4.201 11 C -0.542 4.542 12 H 0.093 0.907 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.225 1.225 18 H -0.191 1.191 19 C 0.049 3.951 20 O -0.296 6.296 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.145 0.855 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.867 -12.049 -6.163 14.075 hybrid contribution 0.928 -0.110 0.933 1.320 sum 4.794 -12.159 -5.231 14.078 Atomic orbital electron populations 1.21712 0.94932 1.00924 1.02575 1.20304 0.96211 0.92706 1.01674 1.20057 1.02035 0.96465 0.93051 1.20676 1.02151 0.95458 0.96477 1.21082 1.01150 0.94727 0.97914 1.21004 0.99578 0.99911 0.91214 1.20541 0.94169 0.92715 0.97379 1.18267 0.93079 0.95983 0.90709 0.93793 1.22185 0.98039 0.99092 1.00812 1.20922 1.25112 1.04811 1.03331 0.90720 1.24990 0.95265 0.94774 0.98160 1.69891 1.39396 1.13464 1.31112 0.86818 0.79689 0.79024 0.82462 1.20720 1.22532 1.19126 1.18187 1.00616 0.91547 0.84778 1.84870 1.38526 1.71073 1.35142 0.92937 0.93077 0.91892 0.91918 0.91537 0.86835 0.86702 0.85514 0.94021 0.95328 0.92770 0.92649 0.77012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.89 37.16 0.37 -1.52 16 2 C -0.07 -0.94 5.78 -27.89 -0.16 -1.11 16 3 C -0.12 -1.89 5.15 -104.47 -0.54 -2.43 16 4 C -0.13 -2.01 9.68 -39.60 -0.38 -2.39 16 5 C -0.13 -2.15 10.04 -39.56 -0.40 -2.55 16 6 C -0.10 -1.94 8.71 -39.61 -0.34 -2.28 16 7 C -0.05 -1.01 4.75 -104.48 -0.50 -1.50 16 8 C 0.04 0.92 2.03 -92.92 -0.19 0.73 16 9 H 0.04 1.09 6.05 -51.93 -0.31 0.77 16 10 C -0.14 -3.11 8.49 37.16 0.32 -2.80 16 11 C -0.50 -14.34 8.82 -34.44 -0.30 -14.64 16 12 H 0.07 2.33 7.84 -52.49 -0.41 1.92 16 13 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 14 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 15 Si 0.89 22.18 24.37 -169.99 -4.14 18.03 16 16 H -0.28 -6.75 6.87 56.52 0.39 -6.36 16 17 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 18 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16 19 C 0.09 1.77 6.65 -39.22 -0.26 1.51 16 20 O -0.49 -8.74 11.41 -19.43 -0.22 -8.96 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 25 H 0.07 0.82 7.70 -51.93 -0.40 0.42 16 26 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.13 2.51 7.58 -52.49 -0.40 2.11 16 29 H 0.04 0.94 3.27 -51.92 -0.17 0.77 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 1.13 7.39 -51.93 -0.38 0.74 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 33 H 0.38 4.91 9.06 45.56 0.41 5.32 16 LS Contribution 269.63 15.07 4.06 4.06 Total: -1.00 -31.74 269.63 -5.82 -37.56 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -3.80 Total: 3.44 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -2.49 Total: -27.07 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.77 Total: -27.07 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.22 Total: -8.96 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.74 -5.82 -37.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.074 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds