Wall clock time and date at job start Mon Mar 30 2020 20:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00007 * 2 1 4 4 C 1.50707 * 109.46739 * 179.97438 * 3 2 1 5 5 C 1.38248 * 120.00288 * 359.97109 * 4 3 2 6 6 C 1.38213 * 120.00314 * 180.02562 * 5 4 3 7 7 C 1.38256 * 119.99842 * 359.97438 * 6 5 4 8 8 C 1.38215 * 120.00098 * 359.81334 * 7 6 5 9 9 C 1.38216 * 119.99541 * 179.97438 * 4 3 2 10 10 C 1.50696 * 120.00119 * 359.97438 * 9 4 3 11 11 H 1.08997 * 109.47436 * 0.02562 * 10 9 4 12 12 C 1.53000 * 109.47067 * 240.00124 * 10 9 4 13 13 C 1.50704 * 109.47153 * 120.00032 * 10 9 4 14 14 H 1.07994 * 119.99819 * 5.61761 * 13 10 9 15 15 C 1.37877 * 119.99889 * 185.60952 * 13 10 9 16 16 N 1.31509 * 119.99669 * 197.60699 * 15 13 10 17 17 Si 1.86802 * 120.00211 * 17.61272 * 15 13 10 18 18 H 1.48494 * 109.47325 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.46647 * 299.99691 * 17 15 13 20 20 H 1.48498 * 109.47208 * 59.99211 * 17 15 13 21 21 H 1.09004 * 109.47349 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47713 * 300.00602 * 1 2 3 23 23 H 1.09007 * 109.46769 * 60.00766 * 1 2 3 24 24 H 1.08995 * 109.47343 * 59.99531 * 3 2 1 25 25 H 1.09003 * 109.46810 * 299.98954 * 3 2 1 26 26 H 1.08007 * 120.00043 * 359.97438 * 5 4 3 27 27 H 1.08001 * 120.00614 * 179.97438 * 6 5 4 28 28 H 1.08001 * 120.00398 * 179.97438 * 7 6 5 29 29 H 1.07998 * 120.00777 * 180.22736 * 8 7 6 30 30 H 1.09008 * 109.47193 * 186.17325 * 12 10 9 31 31 H 1.08999 * 109.47597 * 306.17165 * 12 10 9 32 32 H 1.09002 * 109.47215 * 66.17472 * 12 10 9 33 33 H 0.96997 * 120.00890 * 354.79285 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1071 -0.0617 0.0017 6 6 5.4849 -0.1710 0.0028 7 6 6.2686 0.9680 0.0023 8 6 5.6743 2.2158 -0.0032 9 6 4.2960 2.3251 0.0002 10 6 3.6479 3.6855 -0.0015 11 1 2.5639 3.5717 -0.0017 12 6 4.0806 4.4550 -1.2511 13 6 4.0723 4.4457 1.2287 14 1 4.8132 4.0268 1.8934 15 6 3.5148 5.6760 1.5053 16 7 4.1049 6.4894 2.3536 17 14 1.9212 6.1873 0.6755 18 1 1.5345 7.5438 1.1395 19 1 2.1131 6.2033 -0.7970 20 1 0.8492 5.2208 1.0244 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.6885 1.8464 0.8899 25 1 1.6887 1.8463 -0.8901 26 1 3.4948 -0.9515 0.0025 27 1 5.9494 -1.1460 0.0041 28 1 7.3452 0.8827 0.0036 29 1 6.2863 3.1056 -0.0073 30 1 3.7015 5.4757 -1.1987 31 1 5.1690 4.4742 -1.3073 32 1 3.6796 3.9635 -2.1375 33 1 4.8900 6.1955 2.8414 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261234840.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:24 Heat of formation + Delta-G solvation = -34.054721 kcal Electronic energy + Delta-G solvation = -14923.247183 eV Core-core repulsion = 12527.561600 eV Total energy + Delta-G solvation = -2395.685584 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.19548 -37.25563 -34.50799 -31.88527 -31.23031 -28.74130 -26.93118 -25.07666 -24.73996 -22.53543 -20.80974 -19.27499 -17.40813 -16.27190 -16.12287 -15.61767 -14.75874 -14.10731 -14.01465 -13.67408 -13.18994 -12.93267 -12.51166 -12.25449 -12.08859 -11.61936 -11.52248 -11.22263 -11.07097 -10.63204 -10.43523 -10.12887 -9.75395 -9.62015 -9.57520 -8.96160 -8.24815 -8.12948 -7.85028 -6.45904 -4.08399 1.96529 2.11500 3.34644 3.37391 3.56407 3.96059 4.41648 4.45455 5.21959 5.27409 5.42461 5.47031 5.48723 5.67353 5.69279 5.72956 5.79922 5.91339 6.08004 6.28934 6.37564 6.49460 6.59168 6.76400 6.79891 6.95377 7.03800 7.11146 7.27233 7.45973 7.57325 7.67339 8.09417 8.36621 8.89180 9.59177 10.92000 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.011257 C = 0.008347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.905192 B = 2486.804271 C = 3353.839766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.106 3.894 4 C -0.105 4.105 5 C -0.101 4.101 6 C -0.149 4.149 7 C -0.125 4.125 8 C -0.111 4.111 9 C -0.020 4.020 10 C 0.041 3.959 11 H 0.027 0.973 12 C -0.144 4.144 13 C -0.591 4.591 14 H 0.058 0.942 15 C 0.031 3.969 16 N -0.905 5.905 17 Si 1.043 2.957 18 H -0.285 1.285 19 H -0.273 1.273 20 H -0.284 1.284 21 H 0.082 0.918 22 H 0.041 0.959 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.122 0.878 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.023 0.977 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.554 -10.493 -6.225 12.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C 0.031 3.969 4 C -0.105 4.105 5 C -0.119 4.119 6 C -0.168 4.168 7 C -0.144 4.144 8 C -0.129 4.129 9 C -0.020 4.020 10 C 0.022 3.978 11 H 0.045 0.955 12 C -0.202 4.202 13 C -0.628 4.628 14 H 0.077 0.923 15 C -0.174 4.174 16 N -0.539 5.539 17 Si 0.871 3.129 18 H -0.211 1.211 19 H -0.199 1.199 20 H -0.211 1.211 21 H 0.101 0.899 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.140 0.860 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.507 -9.382 -6.366 12.201 hybrid contribution 0.968 -1.061 0.309 1.469 sum -3.539 -10.443 -6.057 12.580 Atomic orbital electron populations 1.22700 0.81422 1.02253 1.00106 1.87799 1.19277 1.28500 1.95527 1.21291 0.90888 0.83750 1.00999 1.19493 0.93479 0.93566 1.03950 1.20809 0.94286 0.97062 0.99762 1.20913 0.93858 0.97798 1.04192 1.21085 0.99069 0.92952 1.01246 1.20975 0.94628 0.96970 1.00295 1.20029 0.93371 0.95237 0.93411 1.18238 0.95023 0.88730 0.95812 0.95483 1.22231 1.00815 1.00492 0.96632 1.21935 1.26798 1.05525 1.08578 0.92337 1.25746 1.01703 0.92519 0.97435 1.70849 1.21228 1.34726 1.27145 0.84076 0.75938 0.76362 0.76503 1.21107 1.19913 1.21065 0.89943 0.94019 0.94203 0.91433 0.92238 0.86035 0.87119 0.87072 0.85992 0.92538 0.93491 0.95838 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.39 -6.38 9.18 -35.23 -0.32 -6.70 16 3 C 0.11 1.92 4.79 36.01 0.17 2.09 16 4 C -0.10 -2.08 5.88 -104.62 -0.62 -2.69 16 5 C -0.10 -1.82 9.38 -39.59 -0.37 -2.19 16 6 C -0.15 -2.50 10.05 -39.58 -0.40 -2.90 16 7 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 8 C -0.11 -2.26 8.59 -39.58 -0.34 -2.60 16 9 C -0.02 -0.44 4.74 -104.62 -0.50 -0.94 16 10 C 0.04 0.96 1.92 -92.92 -0.18 0.78 16 11 H 0.03 0.63 4.67 -51.93 -0.24 0.38 16 12 C -0.14 -3.15 8.77 37.16 0.33 -2.82 16 13 C -0.59 -16.28 8.54 -34.44 -0.29 -16.58 16 14 H 0.06 1.76 7.78 -52.49 -0.41 1.35 16 15 C 0.03 0.88 5.29 -17.82 -0.09 0.78 16 16 N -0.91 -27.46 13.69 55.43 0.76 -26.70 16 17 Si 1.04 24.64 26.29 -169.99 -4.47 20.17 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -5.93 5.76 56.52 0.33 -5.60 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 24 H 0.07 1.27 7.85 -51.93 -0.41 0.87 16 25 H 0.06 1.02 7.85 -51.93 -0.41 0.61 16 26 H 0.12 2.01 7.01 -52.48 -0.37 1.65 16 27 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.12 2.53 7.53 -52.49 -0.40 2.13 16 30 H 0.06 1.27 4.89 -51.92 -0.25 1.02 16 31 H 0.05 1.00 7.18 -51.93 -0.37 0.62 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.27 8.13 8.73 -40.82 -0.36 7.77 16 LS Contribution 270.31 15.07 4.07 4.07 Total: -1.00 -29.93 270.31 -6.15 -36.08 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.62 Total: 1.24 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: -1.57 Total: -28.16 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.76 Total: -26.70 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.32 Total: -6.70 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -4.47 Total: 20.17 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.93 -6.15 -36.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234840.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.026 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds