Wall clock time and date at job start Mon Mar 30 2020 20:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00007 * 2 1 4 4 C 1.50707 * 109.46739 * 179.97438 * 3 2 1 5 5 C 1.38248 * 120.00288 * 359.97109 * 4 3 2 6 6 C 1.38213 * 120.00314 * 180.02562 * 5 4 3 7 7 C 1.38256 * 119.99842 * 359.97438 * 6 5 4 8 8 C 1.38215 * 120.00098 * 359.81334 * 7 6 5 9 9 C 1.38216 * 119.99541 * 179.97438 * 4 3 2 10 10 C 1.50696 * 120.00119 * 359.97438 * 9 4 3 11 11 H 1.08997 * 109.47436 * 0.02562 * 10 9 4 12 12 C 1.53000 * 109.47067 * 240.00124 * 10 9 4 13 13 C 1.50704 * 109.47153 * 120.00032 * 10 9 4 14 14 H 1.07994 * 119.99819 * 5.61761 * 13 10 9 15 15 C 1.37877 * 119.99889 * 185.60952 * 13 10 9 16 16 N 1.31509 * 119.99669 * 197.60699 * 15 13 10 17 17 Si 1.86802 * 120.00211 * 17.61272 * 15 13 10 18 18 H 1.48494 * 109.47325 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.46647 * 299.99691 * 17 15 13 20 20 H 1.48498 * 109.47208 * 59.99211 * 17 15 13 21 21 H 1.09004 * 109.47349 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47713 * 300.00602 * 1 2 3 23 23 H 1.09007 * 109.46769 * 60.00766 * 1 2 3 24 24 H 1.08995 * 109.47343 * 59.99531 * 3 2 1 25 25 H 1.09003 * 109.46810 * 299.98954 * 3 2 1 26 26 H 1.08007 * 120.00043 * 359.97438 * 5 4 3 27 27 H 1.08001 * 120.00614 * 179.97438 * 6 5 4 28 28 H 1.08001 * 120.00398 * 179.97438 * 7 6 5 29 29 H 1.07998 * 120.00777 * 180.22736 * 8 7 6 30 30 H 1.09008 * 109.47193 * 186.17325 * 12 10 9 31 31 H 1.08999 * 109.47597 * 306.17165 * 12 10 9 32 32 H 1.09002 * 109.47215 * 66.17472 * 12 10 9 33 33 H 0.96997 * 120.00890 * 354.79285 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1071 -0.0617 0.0017 6 6 5.4849 -0.1710 0.0028 7 6 6.2686 0.9680 0.0023 8 6 5.6743 2.2158 -0.0032 9 6 4.2960 2.3251 0.0002 10 6 3.6479 3.6855 -0.0015 11 1 2.5639 3.5717 -0.0017 12 6 4.0806 4.4550 -1.2511 13 6 4.0723 4.4457 1.2287 14 1 4.8132 4.0268 1.8934 15 6 3.5148 5.6760 1.5053 16 7 4.1049 6.4894 2.3536 17 14 1.9212 6.1873 0.6755 18 1 1.5345 7.5438 1.1395 19 1 2.1131 6.2033 -0.7970 20 1 0.8492 5.2208 1.0244 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.6885 1.8464 0.8899 25 1 1.6887 1.8463 -0.8901 26 1 3.4948 -0.9515 0.0025 27 1 5.9494 -1.1460 0.0041 28 1 7.3452 0.8827 0.0036 29 1 6.2863 3.1056 -0.0073 30 1 3.7015 5.4757 -1.1987 31 1 5.1690 4.4742 -1.3073 32 1 3.6796 3.9635 -2.1375 33 1 4.8900 6.1955 2.8414 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234840.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:24 Heat of formation + Delta-G solvation = -52.123966 kcal Electronic energy + Delta-G solvation = -14924.030725 eV Core-core repulsion = 12527.561600 eV Total energy + Delta-G solvation = -2396.469125 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.65523 -38.49412 -36.33481 -33.81311 -32.70951 -30.33527 -28.07997 -26.75684 -26.32341 -24.19800 -22.30139 -20.97059 -19.47570 -17.68797 -17.41953 -16.82574 -16.23408 -15.63202 -15.61513 -15.14980 -14.90527 -14.51927 -14.11581 -13.87349 -13.50083 -13.21736 -13.05458 -12.77188 -12.45226 -12.26025 -12.09570 -11.74154 -11.54372 -11.31759 -10.98884 -10.79125 -10.37879 -9.60181 -9.39601 -8.68599 -6.34341 0.51492 0.63319 1.44972 1.51847 1.71100 2.49037 2.77757 2.94660 3.07752 3.91866 4.11507 4.21550 4.28619 4.34907 4.43515 4.52897 4.59949 4.61097 4.70897 4.81965 4.83729 4.88428 4.93790 5.15189 5.26448 5.30239 5.51787 5.61462 5.71569 5.86659 6.04043 6.10081 6.21044 6.27193 6.59078 7.42300 8.64990 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.011257 C = 0.008347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.905192 B = 2486.804271 C = 3353.839766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.403 6.403 3 C 0.111 3.889 4 C -0.118 4.118 5 C -0.104 4.104 6 C -0.138 4.138 7 C -0.124 4.124 8 C -0.132 4.132 9 C -0.052 4.052 10 C 0.041 3.959 11 H 0.036 0.964 12 C -0.140 4.140 13 C -0.587 4.587 14 H 0.015 0.985 15 C -0.021 4.021 16 N -0.940 5.940 17 Si 1.078 2.922 18 H -0.291 1.291 19 H -0.239 1.239 20 H -0.262 1.262 21 H 0.108 0.892 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.139 0.861 27 H 0.150 0.850 28 H 0.140 0.860 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 -12.620 -7.942 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.035 3.965 4 C -0.118 4.118 5 C -0.121 4.121 6 C -0.156 4.156 7 C -0.142 4.142 8 C -0.150 4.150 9 C -0.052 4.052 10 C 0.022 3.978 11 H 0.054 0.946 12 C -0.198 4.198 13 C -0.625 4.625 14 H 0.033 0.967 15 C -0.218 4.218 16 N -0.576 5.576 17 Si 0.899 3.101 18 H -0.217 1.217 19 H -0.163 1.163 20 H -0.186 1.186 21 H 0.126 0.874 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.157 0.843 27 H 0.168 0.832 28 H 0.158 0.842 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.686 -11.542 -8.095 15.202 hybrid contribution 1.411 -0.549 0.888 1.755 sum -4.275 -12.092 -7.207 14.712 Atomic orbital electron populations 1.22985 0.79269 1.04238 1.00821 1.87764 1.21575 1.27274 1.95607 1.21133 0.90081 0.84681 1.00616 1.19727 0.94537 0.93695 1.03809 1.21096 0.95186 0.96860 0.99006 1.21362 0.93413 0.99158 1.01639 1.21393 1.00780 0.91994 1.00027 1.21003 0.94395 0.97834 1.01755 1.19959 0.94082 0.94936 0.96236 1.18152 0.95580 0.89763 0.94270 0.94612 1.22130 1.00641 0.99978 0.97023 1.22088 1.25112 1.05848 1.09435 0.96677 1.27207 1.04278 0.92911 0.97439 1.70990 1.21612 1.35826 1.29193 0.83680 0.72533 0.76213 0.77708 1.21722 1.16324 1.18647 0.87385 0.93855 0.92940 0.93041 0.91340 0.84340 0.83216 0.84187 0.87848 0.93336 0.94039 0.92877 0.94076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 11.01 113.37 1.25 1.73 16 2 O -0.40 -12.09 9.18 -148.98 -1.37 -13.45 16 3 C 0.11 3.81 4.79 71.24 0.34 4.15 16 4 C -0.12 -4.50 5.88 -19.87 -0.12 -4.61 16 5 C -0.10 -3.45 9.38 22.27 0.21 -3.24 16 6 C -0.14 -4.15 10.05 22.27 0.22 -3.93 16 7 C -0.12 -4.11 10.05 22.27 0.22 -3.88 16 8 C -0.13 -5.38 8.59 22.27 0.19 -5.19 16 9 C -0.05 -2.24 4.74 -19.87 -0.09 -2.33 16 10 C 0.04 1.93 1.92 -12.29 -0.02 1.90 16 11 H 0.04 1.61 4.67 -2.39 -0.01 1.60 16 12 C -0.14 -5.98 8.77 71.98 0.63 -5.35 16 13 C -0.59 -33.44 8.54 25.60 0.22 -33.22 16 14 H 0.01 0.95 7.78 -2.91 -0.02 0.93 16 15 C -0.02 -1.21 5.29 84.66 0.45 -0.76 16 16 N -0.94 -59.27 13.69 21.45 0.29 -58.98 16 17 Si 1.08 49.00 26.29 68.60 1.80 50.81 16 18 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 19 H -0.24 -9.54 5.76 99.48 0.57 -8.97 16 20 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 21 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.05 1.91 7.85 -2.39 -0.02 1.89 16 25 H 0.07 2.19 7.85 -2.39 -0.02 2.17 16 26 H 0.14 4.11 7.01 -2.91 -0.02 4.09 16 27 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 28 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 29 H 0.10 4.48 7.53 -2.91 -0.02 4.45 16 30 H 0.05 2.10 4.89 -2.38 -0.01 2.09 16 31 H 0.04 1.76 7.18 -2.39 -0.02 1.74 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.25 16.11 8.73 -92.71 -0.81 15.30 16 Total: -1.00 -66.57 270.31 5.14 -61.43 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.91 Total: 14.92 kcal Atomic # 6 Polarization: -58.23 SS G_CDS: 3.50 Total: -54.73 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.29 Total: -58.98 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.37 Total: -13.45 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 1.80 Total: 50.81 kcal Total: -66.57 5.14 -61.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234840.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.308 kcal (2) G-P(sol) polarization free energy of solvation -66.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds